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Original URL: https://github.com/schrodinger/pymol-open-source/archive/v2.5.0.tar.gz
Home page: https://www.pymol.org/
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2021-05-10 20:38 13 2021-05-10 20:38 .gitattributes
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2021-05-10 20:38 .github/workflows/ 1572 2021-05-10 20:38 .github/workflows/build.yml 26 2021-05-10 20:38 .gitignore 435 2021-05-10 20:38 AUTHORS 252614 2021-05-10 20:38 ChangeLog 3542 2021-05-10 20:38 DEVELOPERS 1924 2021-05-10 20:38 INSTALL 2268 2021-05-10 20:38 LICENSE 1147 2021-05-10 20:38 PACKAGING 8385 2021-05-10 20:38 README 690 2021-05-10 20:38 README.md
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2021-05-10 20:38 layer2/ 1571 2021-05-10 20:38 layer2/AssemblyHelpers.cpp 432 2021-05-10 20:38 layer2/AssemblyHelpers.h 76117 2021-05-10 20:38 layer2/AtomInfo.cpp 15743 2021-05-10 20:38 layer2/AtomInfo.h 3076 2021-05-10 20:38 layer2/AtomInfoHistory.cpp 8771 2021-05-10 20:38 layer2/AtomInfoHistory.h 820 2021-05-10 20:38 layer2/AtomNeighbors.h 3231 2021-05-10 20:38 layer2/BondTypeHistory.cpp 2170 2021-05-10 20:38 layer2/BondTypeHistory.h 4175 2021-05-10 20:38 layer2/CifBondDict.h 10136 2021-05-10 20:38 layer2/CifFile.cpp 6490 2021-05-10 20:38 layer2/CifFile.h 70134 2021-05-10 20:38 layer2/CifMoleculeReader.cpp 47554 2021-05-10 20:38 layer2/CoordSet.cpp 9531 2021-05-10 20:38 layer2/CoordSet.h 12651 2021-05-10 20:38 layer2/DistSet.cpp 2340 2021-05-10 20:38 layer2/DistSet.h 10153 2021-05-10 20:38 layer2/GadgetSet.cpp 1882 2021-05-10 20:38 layer2/GadgetSet.h 8985 2021-05-10 20:38 layer2/HydrogenAdder.cpp 271 2021-05-10 20:38 layer2/HydrogenAdder.h 4900 2021-05-10 20:38 layer2/MmodTyping.cpp 137 2021-05-10 20:38 layer2/MmodTyping.h 9719 2021-05-10 20:38 layer2/MmtfMoleculeReader.cpp 4628 2021-05-10 20:38 layer2/Mol2Typing.cpp 142 2021-05-10 20:38 layer2/Mol2Typing.h 5995 2021-05-10 20:38 layer2/MolV3000.cpp 316 2021-05-10 20:38 layer2/MolV3000.h 37790 2021-05-10 20:38 layer2/ObjectAlignment.cpp 2324 2021-05-10 20:38 layer2/ObjectAlignment.h 20690 2021-05-10 20:38 layer2/ObjectCGO.cpp 2093 2021-05-10 20:38 layer2/ObjectCGO.h 8141 2021-05-10 20:38 layer2/ObjectCallback.cpp 1544 2021-05-10 20:38 layer2/ObjectCallback.h 18241 2021-05-10 20:38 layer2/ObjectDist.cpp 2838 2021-05-10 20:38 layer2/ObjectDist.h 11326 2021-05-10 20:38 layer2/ObjectGadget.cpp 2047 2021-05-10 20:38 layer2/ObjectGadget.h 30738 2021-05-10 20:38 layer2/ObjectGadgetRamp.cpp 3463 2021-05-10 20:38 layer2/ObjectGadgetRamp.h 2260 2021-05-10 20:38 layer2/ObjectGroup.cpp 1166 2021-05-10 20:38 layer2/ObjectGroup.h 166216 2021-05-10 20:38 layer2/ObjectMap.cpp 8086 2021-05-10 20:38 layer2/ObjectMap.h 38228 2021-05-10 20:38 layer2/ObjectMesh.cpp 3313 2021-05-10 20:38 layer2/ObjectMesh.h 347534 2021-05-10 20:38 layer2/ObjectMolecule.cpp 20307 2021-05-10 20:38 layer2/ObjectMolecule.h 124368 2021-05-10 20:38 layer2/ObjectMolecule2.cpp 6533 2021-05-10 20:38 layer2/ObjectMolecule3.cpp 185 2021-05-10 20:38 layer2/ObjectMolecule3.h 40460 2021-05-10 20:38 layer2/ObjectSlice.cpp 2752 2021-05-10 20:38 layer2/ObjectSlice.h 34702 2021-05-10 20:38 layer2/ObjectSurface.cpp 2835 2021-05-10 20:38 layer2/ObjectSurface.h 37255 2021-05-10 20:38 layer2/ObjectVolume.cpp 3323 2021-05-10 20:38 layer2/ObjectVolume.h 12522 2021-05-10 20:38 layer2/RepAngle.cpp 804 2021-05-10 20:38 layer2/RepAngle.h 129747 2021-05-10 20:38 layer2/RepCartoon.cpp 830 2021-05-10 20:38 layer2/RepCartoon.h 36958 2021-05-10 20:38 layer2/RepCylBond.cpp 896 2021-05-10 20:38 layer2/RepCylBond.h 13437 2021-05-10 20:38 layer2/RepDihedral.cpp 829 2021-05-10 20:38 layer2/RepDihedral.h 11898 2021-05-10 20:38 layer2/RepDistDash.cpp 829 2021-05-10 20:38 layer2/RepDistDash.h 14003 2021-05-10 20:38 layer2/RepDistLabel.cpp 832 2021-05-10 20:38 layer2/RepDistLabel.h 12522 2021-05-10 20:38 layer2/RepDot.cpp 1537 2021-05-10 20:38 layer2/RepDot.h 10192 2021-05-10 20:38 layer2/RepEllipsoid.cpp 836 2021-05-10 20:38 layer2/RepEllipsoid.h 59179 2021-05-10 20:38 layer2/RepLabel.cpp 1057 2021-05-10 20:38 layer2/RepLabel.h 38242 2021-05-10 20:38 layer2/RepMesh.cpp 934 2021-05-10 20:38 layer2/RepMesh.h 9088 2021-05-10 20:38 layer2/RepNonbonded.cpp 904 2021-05-10 20:38 layer2/RepNonbonded.h 5491 2021-05-10 20:38 layer2/RepNonbondedSphere.cpp 854 2021-05-10 20:38 layer2/RepNonbondedSphere.h 20466 2021-05-10 20:38 layer2/RepRibbon.cpp 892 2021-05-10 20:38 layer2/RepRibbon.h 18238 2021-05-10 20:38 layer2/RepSphere.cpp 1258 2021-05-10 20:38 layer2/RepSphere.h 3291 2021-05-10 20:38 layer2/RepSphereGenerate.cpp 1116 2021-05-10 20:38 layer2/RepSphereGenerate.h 7106 2021-05-10 20:38 layer2/RepSphereImmediate.cpp 789 2021-05-10 20:38 layer2/RepSphereImmediate.h 150540 2021-05-10 20:38 layer2/RepSurface.cpp 1016 2021-05-10 20:38 layer2/RepSurface.h 27875 2021-05-10 20:38 layer2/RepWireBond.cpp 900 2021-05-10 20:38 layer2/RepWireBond.h 80766 2021-05-10 20:38 layer2/Sculpt.cpp 1705 2021-05-10 20:38 layer2/Sculpt.h 2653 2021-05-10 20:38 layer2/SculptCache.cpp 1147 2021-05-10 20:38 layer2/SculptCache.h 5033 2021-05-10 20:38 layer2/SideChainHelper.cpp 592 2021-05-10 20:38 layer2/SideChainHelper.h 8624 2021-05-10 20:38 layer2/VFont.cpp 1221 2021-05-10 20:38 layer2/VFont.h
2021-05-10 20:38 layer3/ 4037 2021-05-10 20:38 layer3/AtomIterators.cpp 4290 2021-05-10 20:38 layer3/AtomIterators.h 2282 2021-05-10 20:38 layer3/CifDataValueFormatter.cpp 734 2021-05-10 20:38 layer3/CifDataValueFormatter.h 74122 2021-05-10 20:38 layer3/Editor.cpp 4072 2021-05-10 20:38 layer3/Editor.h 516174 2021-05-10 20:38 layer3/Executive.cpp 39054 2021-05-10 20:38 layer3/Executive.h 2505 2021-05-10 20:38 layer3/ExecutiveDef.h 1039 2021-05-10 20:38 layer3/ExecutiveLoad.h 7385 2021-05-10 20:38 layer3/ExecutivePython.cpp 524 2021-05-10 20:38 layer3/ExecutivePython.h 983 2021-05-10 20:38 layer3/Executive_pre.h 5384 2021-05-10 20:38 layer3/MaeExportHelpers.cpp 751 2021-05-10 20:38 layer3/MaeExportHelpers.h 50553 2021-05-10 20:38 layer3/MoleculeExporter.cpp 530 2021-05-10 20:38 layer3/MoleculeExporter.h 21461 2021-05-10 20:38 layer3/MovieScene.cpp 3295 2021-05-10 20:38 layer3/MovieScene.h 30441 2021-05-10 20:38 layer3/PlugIOManager.cpp 2009 2021-05-10 20:38 layer3/PlugIOManager.h 1084 2021-05-10 20:38 layer3/RingFinder.cpp 1113 2021-05-10 20:38 layer3/RingFinder.h 61986 2021-05-10 20:38 layer3/Seeker.cpp 1697 2021-05-10 20:38 layer3/Seeker.h 333271 2021-05-10 20:38 layer3/Selector.cpp 12531 2021-05-10 20:38 layer3/Selector.h 2137 2021-05-10 20:38 layer3/SelectorDef.h 1457 2021-05-10 20:38 layer3/SelectorTmp.cpp 1364 2021-05-10 20:38 layer3/SpecRec.cpp 940 2021-05-10 20:38 layer3/SpecRec.h 248 2021-05-10 20:38 layer3/SpecRecSpecial.cpp 515 2021-05-10 20:38 layer3/SpecRecSpecial.h
2021-05-10 20:38 layer4/ 172851 2021-05-10 20:38 layer4/Cmd.cpp 847 2021-05-10 20:38 layer4/Cmd.h 3109 2021-05-10 20:38 layer4/Menu.cpp 1542 2021-05-10 20:38 layer4/Menu.h 27770 2021-05-10 20:38 layer4/PopUp.cpp 911 2021-05-10 20:38 layer4/PopUp.h
2021-05-10 20:38 layer5/ 98571 2021-05-10 20:38 layer5/PyMOL.cpp 21854 2021-05-10 20:38 layer5/PyMOL.h 20587 2021-05-10 20:38 layer5/TestPyMOL.cpp 791 2021-05-10 20:38 layer5/TestPyMOL.h 42776 2021-05-10 20:38 layer5/main.cpp 1407 2021-05-10 20:38 layer5/main.h
2021-05-10 20:38 layerCTest/ 1014 2021-05-10 20:38 layerCTest/Test.cpp 2067 2021-05-10 20:38 layerCTest/Test.h 68 2021-05-10 20:38 layerCTest/TestCmdTest2.h 1967 2021-05-10 20:38 layerCTest/Test_Algorithm.cpp 3322 2021-05-10 20:38 layerCTest/Test_CCrystal.cpp 5567 2021-05-10 20:38 layerCTest/Test_CifFile.cpp 226 2021-05-10 20:38 layerCTest/Test_Classic_VLA.cpp 5756 2021-05-10 20:38 layerCTest/Test_Image.cpp 4845 2021-05-10 20:38 layerCTest/Test_List.cpp 3351 2021-05-10 20:38 layerCTest/Test_Picking.cpp 2152 2021-05-10 20:38 layerCTest/Test_Result.cpp 2412 2021-05-10 20:38 layerCTest/Test_ScrollBar.cpp 798 2021-05-10 20:38 layerCTest/Test_SymOp.cpp 1170 2021-05-10 20:38 layerCTest/Test_Test.cpp 1786 2021-05-10 20:38 layerCTest/Test_Util.cpp 4480 2021-05-10 20:38 layerCTest/Test_VLA.cpp 1545 2021-05-10 20:38 layerCTest/Test_cache_ptr.cpp 1715 2021-05-10 20:38 layerCTest/Test_copyable_ptr.cpp 916 2021-05-10 20:38 layerCTest/Test_type_traits.cpp 6634 2021-05-10 20:38 layerCTest/Test_zstring_view.cpp
2021-05-10 20:38 modules/
2021-05-10 20:38 modules/chempy/ 15991 2021-05-10 20:38 modules/chempy/__init__.py 1354 2021-05-10 20:38 modules/chempy/arc.py
2021-05-10 20:38 modules/chempy/bmin/ 1413 2021-05-10 20:38 modules/chempy/bmin/__init__.py 1233 2021-05-10 20:38 modules/chempy/bmin/commands.py 3230 2021-05-10 20:38 modules/chempy/bmin/realtime.py 3148 2021-05-10 20:38 modules/chempy/bmin/state.py 1673 2021-05-10 20:38 modules/chempy/bmin/util.py 4747 2021-05-10 20:38 modules/chempy/bond_amber.py 4205 2021-05-10 20:38 modules/chempy/bond_mmff.py 24301 2021-05-10 20:38 modules/chempy/bonds.py 2038 2021-05-10 20:38 modules/chempy/brick.py 2130 2021-05-10 20:38 modules/chempy/cc1.py
2021-05-10 20:38 modules/chempy/champ/ 9411 2021-05-10 20:38 modules/chempy/champ/__init__.py 77045 2021-05-10 20:38 modules/chempy/champ/amber99.py 8985 2021-05-10 20:38 modules/chempy/champ/assign.py 5784 2021-05-10 20:38 modules/chempy/champ/formal_charges.py 4080 2021-05-10 20:38 modules/chempy/charge.py 25494 2021-05-10 20:38 modules/chempy/cif.py 13742 2021-05-10 20:38 modules/chempy/cpv.py 24958 2021-05-10 20:38 modules/chempy/dictdb.py
2021-05-10 20:38 modules/chempy/fast/ 5008 2021-05-10 20:38 modules/chempy/fast/__init__.py
2021-05-10 20:38 modules/chempy/fragments/ 133 2021-05-10 20:38 modules/chempy/fragments/__init__.py 22373 2021-05-10 20:38 modules/chempy/gamess1.py 3081 2021-05-10 20:38 modules/chempy/gms.py 8020 2021-05-10 20:38 modules/chempy/hetatm.py 1268 2021-05-10 20:38 modules/chempy/io.py 1183 2021-05-10 20:38 modules/chempy/lst.py 12252 2021-05-10 20:38 modules/chempy/mae.py 1898 2021-05-10 20:38 modules/chempy/map.py 1496 2021-05-10 20:38 modules/chempy/mass.py 7564 2021-05-10 20:38 modules/chempy/mmd.py
2021-05-10 20:38 modules/chempy/mmtf/ 4503 2021-05-10 20:38 modules/chempy/mmtf/__init__.py 7235 2021-05-10 20:38 modules/chempy/mmtf/io.py 24485 2021-05-10 20:38 modules/chempy/models.py 4792 2021-05-10 20:38 modules/chempy/mol.py 3737 2021-05-10 20:38 modules/chempy/mol2.py 2428 2021-05-10 20:38 modules/chempy/neighbor.py 3708 2021-05-10 20:38 modules/chempy/pdb.py 3652 2021-05-10 20:38 modules/chempy/pkl.py 14803 2021-05-10 20:38 modules/chempy/place.py 19118 2021-05-10 20:38 modules/chempy/protein.py 83108 2021-05-10 20:38 modules/chempy/protein_amber.py 83144 2021-05-10 20:38 modules/chempy/protein_amber99.py 75507 2021-05-10 20:38 modules/chempy/protein_mmff.py 140484 2021-05-10 20:38 modules/chempy/protein_residues.py 5166 2021-05-10 20:38 modules/chempy/sdf.py 2038 2021-05-10 20:38 modules/chempy/solvate.py
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