"Fossies" - the Fresh Open Source Software Archive

Contents of mcsim-6.2.0.tar.gz (3 Jun 21:29, 2221353 Bytes)

About: GNU MCSim is a simulation package to design your own statistical or simulation models, perform Monte Carlo simulations, do Bayesian inference through Markov Chain models.



Fossies downloads: /linux/privatmcsim-6.2.0.tar.gz  (tar.bz2|tar.xz|zip)
Fossies services: Doxygen docs | Diffs report | CLOC analysis
Original URL: ftp://ftp.gnu.org/gnu/mcsim/mcsim-6.2.0.tar.gz
Home page: https://www.gnu.org/software/mcsim/
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Member paths+URLs:  Shortened | full
Member sort order:  docs related (infos|docs|other) | original | size | date | path | name | ext | top-path files

Basic infos (README, FAQ, INSTALL, ChangeLog, ...):
-rw-rw-r--        73 2013-03-13 14:55 AUTHORS
-rw-rw-r--         0 2010-02-25 16:48 ChangeLog
-rw-rw-r--     35147 2010-04-27 10:39 COPYING
-rw-rw-r--      9432 2019-02-15 13:28 INSTALL
-rw-rw-r--         0 2010-02-25 16:48 NEWS
-rw-rw-r--      1598 2015-12-05 19:53 README

Basic docs (manual pages, PDF-,HTML-,/doc/-files, ...):
-rw-rw-r--      1724 2020-06-03 15:23 doc/About-MCSim.txt
-rw-rw-r--    363189 2020-06-03 17:47 doc/mcsim.html
-rw-rw-r--    234442 2020-06-03 17:49 doc/mcsim.info
-rw-rw-r--    516866 2020-06-03 17:46 doc/mcsim.pdf
-rw-rw-r--     28871 2000-05-23 10:08 doc/Programming-notes.txt
-rw-r--r--    323102 2020-06-03 17:44 doc/texinfo.tex
-rw-rw-r--      2819 2002-07-31 09:45 xmcsim/xgpl.doc
-rw-rw-r--      1228 2015-11-29 17:16 xmcsim/xmcsim.doc
-rw-rw-r--     14523 2017-03-28 22:10 examples/butadiene/butadiene.MCMC.inter.1.in
-rw-rw-r--     14524 2017-03-28 22:10 examples/butadiene/butadiene.MCMC.inter.2.in
-rw-rw-r--     14525 2017-03-28 22:10 examples/butadiene/butadiene.MCMC.inter.3.in
-rw-rw-r--     25445 2017-03-28 22:10 examples/butadiene/butadiene.MCMC.intra.1.in
-rw-rw-r--     25445 2017-03-28 22:10 examples/butadiene/butadiene.MCMC.intra.2.in
-rw-rw-r--     25445 2017-03-28 22:10 examples/butadiene/butadiene.MCMC.intra.3.in

All other files:
-rw-rw-r--      1838 2015-08-13 18:27 examples/1cpt/1cpt.MCMC1.in
-rw-rw-r--     14229 2015-08-13 18:27 examples/1cpt/1cpt.MCMC1.out
-rw-rw-r--      1969 2015-08-13 18:27 examples/1cpt/1cpt.MCMC2.in
-rw-rw-r--     17991 2015-08-13 18:27 examples/1cpt/1cpt.MCMC2.out
-rw-rw-r--      1984 2015-08-13 18:27 examples/1cpt/1cpt.MCMC3.in
-rw-rw-r--      9081 2015-08-13 18:27 examples/1cpt/1cpt.MCMC3.out
-rw-rw-r--      2183 2015-08-13 18:27 examples/1cpt/1cpt.MCMC4.in
-rw-rw-r--     21522 2015-08-13 18:27 examples/1cpt/1cpt.MCMC4.out
-rw-rw-r--      2133 2015-08-13 18:27 examples/1cpt/1cpt.MCMC5.in
-rw-rw-r--      4617 2015-08-13 18:27 examples/1cpt/1cpt.MCMC5.out
-rw-rw-r--      1835 2015-08-13 18:27 examples/1cpt/1cpt.model
-rw-rw-r--       984 2015-08-13 18:27 examples/1cpt/1cpt_no_noise.in
-rw-rw-r--       872 2015-08-13 18:27 examples/1cpt/1cpt_no_noise.out
-rw-rw-r--      1867 2018-05-13 15:43 examples/1cpt/1cpt.SO.in
-rw-rw-r--     71582 2015-08-13 18:27 examples/1cpt/1cpt.SO.out
-rw-rw-r--      1923 2015-11-29 18:03 examples/1cpt/1cpt.T.in
-rw-rw-r--    209608 2015-08-13 18:27 examples/1cpt/1cpt.T.out
-rw-rw-r--       996 2015-08-13 18:27 examples/1cpt/1cpt_w._noise.in
-rw-rw-r--       872 2015-08-13 18:27 examples/1cpt/1cpt_w._noise.out
-rw-rw-r--      1748 2015-08-14 08:01 examples/SBML/2cpt.model
-rw-rw-r--     17859 2020-02-26 12:11 examples/PBPK_ACAT/ACAT_like.model
-rw-rw-r--     44323 2020-06-03 15:40 aclocal.m4
-rw-rw-r--      2271 2018-02-23 10:21 examples/diffusion/Analysis.R
-rwxr-xr-x      5826 2020-06-03 15:40 ar-lib
-rw-rw-r--      1188 2015-08-13 18:39 examples/binomial/binomial.fit.in
-rw-rw-r--       259 2015-08-13 18:39 examples/binomial/binomial.fit.out
-rw-rw-r--      1189 2015-08-13 18:39 examples/binomial/binomial.MCMC.in
-rw-rw-r--     37157 2015-08-13 18:39 examples/binomial/binomial.MCMC.out
-rw-rw-r--       540 2015-08-13 18:39 examples/binomial/binomial.model
-rw-rw-r--      2721 2015-08-14 07:35 examples/optimal_design/butadiene.model
-rw-rw-r--      5566 2017-03-28 22:10 examples/butadiene/butadiene.model
-rw-rw-r--      1930 2015-08-14 07:35 examples/optimal_design/butadiene.opt.in
-rw-rw-r--      1881 2015-08-14 07:35 examples/optimal_design/butadiene.opt.out
-rw-rw-r--     64159 2015-08-14 07:35 examples/optimal_design/butadiene.pop.sample
-rwxrwxr-x      3509 2015-08-14 08:01 examples/SBML/C_central.xml
-rwxr-xr-x      7333 2020-06-03 15:40 compile
-rwxr-xr-x     44283 2020-06-03 15:40 config.guess
-rw-rw-r--      3493 2020-06-03 15:40 config.h.in
-rw-rw-r--      3758 2020-06-03 15:40 config.h
-rwxr-xr-x     36136 2020-06-03 15:40 config.sub
-rwxrwxr-x      2331 2020-06-03 15:26 configure.ac
-rwxrwxr-x    506220 2020-06-03 15:40 configure
-rwxrwxr-x      3499 2015-08-14 08:01 examples/SBML/C_periph.xml
-rw-rw-r--      6413 2020-01-19 20:47 sim/delays.c
-rw-rw-r--      1445 2017-12-16 15:39 sim/delays.h
-rwxr-xr-x     23567 2020-06-03 15:40 depcomp
-rw-rw-r--       774 2018-02-23 10:21 examples/diffusion/diffusion_1.in
-rw-rw-r--       740 2018-02-23 10:21 examples/diffusion/diffusion_1.model
-rw-rw-r--      4865 2018-02-23 10:21 examples/diffusion/diffusion_1.out
-rw-rw-r--       843 2018-02-23 10:21 examples/diffusion/diffusion_2.in
-rw-rw-r--       952 2018-02-23 10:21 examples/diffusion/diffusion_2.model
-rw-rw-r--     46210 2018-02-23 10:21 examples/diffusion/diffusion_2.out
-rw-rw-r--       481 2018-02-23 10:21 examples/diffusion/diffusion_c2.in
-rw-rw-r--       974 2018-02-23 10:21 examples/diffusion/diffusion_c2.model
-rw-rw-r--    229109 2018-02-23 10:21 examples/diffusion/diffusion_c2.out
-rw-rw-r--       216 2017-09-23 21:41 examples/discontinuity/discontinuity_cvodes.in
-rw-rw-r--     24848 2017-09-23 21:41 examples/discontinuity/discontinuity_cvodes.out
-rw-rw-r--       216 2017-09-23 21:41 examples/discontinuity/discontinuity_lsodes.in
-rw-rw-r--     24818 2017-09-23 21:41 examples/discontinuity/discontinuity_lsodes.out
-rw-rw-r--       175 2017-09-23 21:41 examples/discontinuity/discontinuity.model
-rw-rw-r--      1505 2017-09-23 21:41 examples/discontinuity/discontinuity.R
-rw-rw-r--       555 2015-08-13 19:43 examples/discrete/discrete.in
-rw-rw-r--      1065 2015-08-13 19:43 examples/discrete/discrete.model
-rw-rw-r--      3230 2015-08-13 19:43 examples/discrete/discrete.out
-rw-rw-r--      1901 2020-02-26 12:11 examples/PBPK_ACAT/Drug_X.simple.in
-rw-rw-r--     25911 2015-08-14 07:21 examples/err_in_var/err_in_var.in
-rw-rw-r--      2061 2015-08-14 07:21 examples/err_in_var/err_in_var.model
-rw-rw-r--      1172 2016-09-07 11:08 examples/err_in_var/err_in_var_ODE.in
-rw-rw-r--      1589 2016-09-07 11:08 examples/err_in_var/err_in_var_ODE_MCMC.in
-rw-rw-r--     68787 2016-09-07 11:08 examples/err_in_var/err_in_var_ODE_MCMC.out
-rw-rw-r--      1438 2016-09-07 11:08 examples/err_in_var/err_in_var_ODE.model
-rw-rw-r--       750 2016-09-07 11:08 examples/err_in_var/err_in_var_ODE.out
-rw-rw-r--     61869 2015-08-14 07:21 examples/err_in_var/err_in_var.out
-rw-rw-r--       700 2016-08-30 10:44 examples/events/event.in
-rw-rw-r--       400 2015-11-29 18:13 examples/events/event.model
-rw-rw-r--     20924 2015-11-29 18:13 examples/events/event.out
-rw-rw-r--     18377 2019-06-10 08:40 mod/getopt.c
-rw-rw-r--     18377 2020-01-19 20:47 sim/getopt.c
-rw-rw-r--      3840 2017-12-16 15:39 sim/getopt.h
-rw-rw-r--      4398 2017-12-09 17:40 mod/getopt.h
-rw-rw-r--      2783 2002-07-31 09:45 xmcsim/graph.xbm
-rw-rw-r--      1571 2017-12-09 17:40 mod/hungtype.h
-rw-rw-r--      1625 2017-12-16 15:39 sim/hungtype.h
-rwxr-xr-x     15155 2020-06-03 15:40 install-sh
-rw-rw-r--     22637 2019-03-24 09:52 sim/lex.c
-rw-rw-r--     33366 2019-06-10 08:41 mod/lex.c
-rw-rw-r--      4549 2018-09-02 16:47 mod/lexerr.c
-rw-rw-r--      7253 2018-06-23 08:11 sim/lexerr.c
-rw-rw-r--      1156 2017-12-09 17:40 mod/lexerr.h
-rw-rw-r--      1266 2017-12-16 15:39 sim/lexerr.h
-rw-rw-r--     20262 2020-01-19 20:47 sim/lexfn.c
-rw-rw-r--      9554 2017-12-09 17:40 mod/lexfn.c
-rw-rw-r--      2786 2017-12-09 17:40 mod/lexfn.h
-rw-rw-r--      5050 2017-12-16 15:39 sim/lexfn.h
-rw-rw-r--      6824 2017-12-09 18:06 sim/lex.h
-rw-rw-r--      7847 2018-09-02 16:47 mod/lex.h
-rw-r--r--    306297 2020-06-03 15:40 m4/libtool.m4
-rw-rw-r--       465 2015-08-14 07:25 examples/linear/linear.hier.mtc.in
-rw-rw-r--      1166 2015-08-14 07:25 examples/linear/linear.hier.mtc.out
-rw-rw-r--      2824 2015-08-14 07:25 examples/linear/linear.H.MCMC1.in
-rw-rw-r--     11922 2015-08-14 07:25 examples/linear/linear.H.MCMC1.out
-rw-rw-r--      2892 2015-08-14 07:25 examples/linear/linear.H.MCMC2.in
-rw-rw-r--     46743 2015-08-14 07:25 examples/linear/linear.H.MCMC2.out
-rw-rw-r--      2857 2015-08-14 07:25 examples/linear/linear.H.MCMC3.in
-rw-rw-r--     48215 2015-08-14 07:25 examples/linear/linear.H.MCMC3.out
-rw-rw-r--     88811 2015-08-14 07:25 examples/linear/linear.H.MCMC3.rst
-rw-rw-r--      2843 2015-08-14 07:25 examples/linear/linear.H.MCMC4.in
-rw-rw-r--     12311 2015-08-14 07:25 examples/linear/linear.H.MCMC4.out
-rw-rw-r--     36985 2015-08-14 07:25 examples/linear/linear.H.MCMC4.rst
-rw-rw-r--       426 2015-08-14 07:25 examples/linear/linear.in
-rw-rw-r--       983 2015-08-14 07:25 examples/linear/linear.MCMC1.in
-rw-rw-r--     12584 2015-08-14 07:25 examples/linear/linear.MCMC1.out
-rw-rw-r--      1268 2015-08-14 07:25 examples/linear/linear.MCMC2.in
-rw-rw-r--     12634 2015-08-14 07:25 examples/linear/linear.MCMC2.out
-rw-rw-r--       205 2015-08-14 07:25 examples/linear/linear.MCMC3.data
-rw-rw-r--       918 2015-08-14 07:25 examples/linear/linear.MCMC3.in
-rw-rw-r--     12634 2015-08-14 07:25 examples/linear/linear.MCMC3.out
-rw-rw-r--       564 2015-08-14 07:25 examples/linear/linear.model
-rw-rw-r--       426 2015-08-14 07:25 examples/linear/linear.out
-rw-rw-r--      5058 2017-12-16 15:39 sim/list.c
-rw-rw-r--      2493 2017-12-16 15:39 sim/list.h
-rw-rw-r--    147719 2020-03-21 15:00 sim/lsodes1.c
-rw-rw-r--     43814 2017-12-16 15:39 sim/lsodes2.c
-rw-rw-r--      5297 2020-03-21 15:00 sim/lsodes.h
-rw-r--r--    324412 2020-06-03 15:40 ltmain.sh
-rw-r--r--      6140 2020-06-03 15:40 m4/lt~obsolete.m4
-rw-r--r--     14514 2020-06-03 15:40 m4/ltoptions.m4
-rw-r--r--      4384 2020-06-03 15:40 m4/ltsugar.m4
-rw-r--r--       699 2020-06-03 15:40 m4/ltversion.m4
-rw-rw-r--      6341 2020-06-02 11:16 m4/m4_ax_prog_cc_mpi.m4
-rwxrwxr-x       281 2018-03-25 10:36 Makefile.am
-rwxrwxr-x       358 2020-06-03 08:26 mod/Makefile.am
-rwxrwxr-x        59 2018-03-25 10:37 doc/Makefile.am
-rwxrwxr-x       879 2020-06-03 08:26 sim/Makefile.am
-rw-rw-r--     22524 2020-06-03 15:40 mod/Makefile.in
-rw-rw-r--     23775 2020-06-03 15:40 doc/Makefile.in
-rw-rw-r--     26575 2020-06-03 15:40 sim/Makefile.in
-rw-rw-r--     40897 2020-06-03 15:40 Makefile.in
-rwxrwxr-x      2395 2018-02-23 09:56 examples/perc/Makefile.in
-rw-rw-r--     23962 2020-06-03 15:40 doc/Makefile
-rwxrwxr-x      2475 2020-06-03 15:40 examples/perc/Makefile
-rw-rw-r--       156 2002-07-31 09:45 xmcsim/make_index
-rw-rw-r--       479 2018-03-17 16:19 sim/makemcsimd.in
-rwxrwxr-x       505 2016-01-30 08:39 sim/makemcsim.in
-rw-rw-r--       700 2020-06-03 11:57 sim/makemcsimp.in
-rwxrwxr-x       533 2016-01-30 08:39 sim/makemcsims.in
-rw-rw-r--      6863 2017-12-16 15:39 sim/matutil.c
-rw-rw-r--      1507 2017-12-16 15:39 sim/matutil.h
-rw-rw-r--      1957 2017-12-16 15:39 sim/matutilo.c
-rw-rw-r--      1103 2017-12-16 15:39 sim/matutilo.h
-rw-rw-r--        53 2002-07-31 09:45 xmcsim/mckill
-rw-rw-r--    123091 2020-04-23 16:11 sim/mh.c
-rw-rw-r--      6820 2018-08-17 15:09 sim/mh.h
-rwxr-xr-x      6872 2020-06-03 15:40 missing
-rw-rw-r--     12194 2018-03-25 19:58 mod/mod.c
-rw-rw-r--     25593 2020-04-26 10:45 mod/modd.c
-rw-rw-r--      1987 2017-12-09 17:40 mod/modd.h
-rw-rw-r--     24654 2020-03-14 08:03 sim/modelu.c
-rw-rw-r--      2884 2017-12-16 15:39 sim/modelu.h
-rw-rw-r--      5364 2020-06-03 15:15 mod/mod.h
-rw-rw-r--     16561 2018-09-02 16:47 mod/modi.c
-rw-rw-r--      4044 2017-12-16 15:39 sim/modiface.h
-rw-rw-r--      1796 2017-12-09 17:40 mod/modi.h
-rw-rw-r--     44000 2019-06-10 08:43 mod/modiSBML2.c
-rw-rw-r--     45187 2017-12-09 17:40 mod/modiSBML.c
-rw-rw-r--      1701 2017-12-09 17:40 mod/modiSBML.h
-rw-rw-r--     53916 2019-06-10 08:44 mod/modo.c
-rw-rw-r--      4543 2017-12-09 17:40 mod/modo.h
-rw-rw-r--      1477 2020-06-03 15:42 examples/perc/mtcsim.out
-rw-rw-r--       740 2015-08-14 07:31 examples/multistage/multistage.model
-rw-rw-r--     26595 2018-05-04 23:58 sim/optdsign.c
-rw-rw-r--      2601 2017-12-16 15:39 sim/optdsign.h
-rw-rw-r--       639 2015-08-14 07:38 examples/oscillators/oscillators.in
-rw-rw-r--       830 2015-08-14 07:38 examples/oscillators/oscillators.model
-rw-rw-r--     21097 2015-08-14 07:38 examples/oscillators/oscillators.out
-rw-rw-r--      1902 2016-08-19 09:22 examples/PBPK_base/pbpk_man.in
-rw-rw-r--     20848 2015-08-14 07:40 examples/PBPK_base/pbpk_man.model
-rw-rw-r--     52303 2016-08-19 09:22 examples/PBPK_base/pbpk_man.out
-rw-rw-r--     38704 2015-08-14 07:40 examples/PBPK_base/pbpk_pregnant.model
-rw-rw-r--      5809 2016-08-19 09:22 examples/PBPK_base/pbpk_woman.in
-rw-rw-r--     20860 2015-08-14 07:40 examples/PBPK_base/pbpk_woman.model
-rw-rw-r--     47426 2016-08-19 09:22 examples/PBPK_base/pbpk_woman.out
-rw-rw-r--      1402 2015-08-14 07:43 examples/pde1/pde1.in
-rw-rw-r--      1793 2015-08-14 07:43 examples/pde1/pde1.model
-rw-rw-r--      3557 2015-08-14 07:43 examples/pde1/pde1.out
-rw-rw-r--       834 2017-12-09 17:11 examples/pde2/pde2.in
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-rw-rw-r--      3557 2015-08-14 07:46 examples/pde2/pde2.out
-rw-rw-r--      2311 2019-07-11 16:44 examples/perc/perc.cvodes.in
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-rw-rw-r--      6752 2017-01-24 11:30 examples/R/perc_delay.c
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-rw-rw-r--      7738 2017-12-17 19:21 examples/perc/perc.mcmc-hier.in
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-rw-rw-r--       130 2018-04-10 13:36 examples/perc/perc.vect.setpoint.dat
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-rw-rw-r--       928 2018-04-10 13:36 examples/perc/perc.vect.setpoint.out
-rw-rw-r--      1536 2016-12-30 15:52 examples/butadiene/R script for trajectory plots.R
-rw-rw-r--      2442 2015-08-14 07:53 examples/probit/probit.in
-rw-rw-r--       791 2015-08-14 07:53 examples/probit/probit.model
-rw-rw-r--      7252 2015-08-14 07:53 examples/probit/probit.out
-rw-rw-r--       328 2015-08-14 08:01 examples/SBML/pure_SBML.in
-rw-rw-r--     46347 2020-05-10 09:55 sim/random.c
-rw-rw-r--      4004 2020-04-24 15:55 sim/random.h
-rw-rw-r--      1527 2015-08-14 07:57 examples/random_numbers/random.in
-rw-rw-r--       699 2015-08-14 07:57 examples/random_numbers/random.model
-rw-rw-r--      2268 2015-08-14 07:57 examples/random_numbers/random.out
-rw-rw-r--     17289 2020-06-03 15:33 examples/perc/ref_model.c
-rw-rw-r--      2024 2015-12-20 16:46 examples/R/running_simple.R
-rw-rw-r--      2628 2017-01-24 11:30 examples/R/run_perc.R
-rw-rw-r--       543 2015-08-14 08:01 examples/SBML/SBML_List.in
-rw-rw-r--       597 2020-06-03 15:42 examples/perc/setsim.out
-rw-rw-r--     36484 2020-06-02 12:35 sim/sim.c
-rw-rw-r--     19680 2020-06-03 15:19 sim/sim.h
-rw-rw-r--     85736 2020-05-29 22:09 sim/simi.c
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-rw-rw-r--     11161 2020-04-24 15:55 sim/simmonte.c
-rw-rw-r--      1467 2018-07-02 21:03 sim/simmonte.h
-rw-rw-r--      9105 2018-08-17 15:09 sim/simo.c
-rw-rw-r--      1457 2018-07-02 21:03 sim/simo.h
-rw-rw-r--      1689 2020-06-03 15:42 examples/perc/sim.out
-rw-rw-r--       561 2015-08-14 07:55 examples/R/simple.model
-rw-rw-r--      1730 2017-12-16 15:39 sim/strutil.c
-rw-rw-r--      1770 2017-12-09 17:40 mod/strutil.c
-rw-rw-r--      1451 2017-12-09 17:40 mod/strutil.h
-rw-rw-r--      1494 2017-12-16 15:39 sim/strutil.h
-rw-rw-r--      2058 2002-07-31 09:45 xmcsim/tclIndex
-rwxr-xr-x      4640 2020-06-03 15:40 test-driver
-rw-rw-r--      1884 2018-02-18 20:52 examples/test_transit_input/test_transit_input.in
-rw-rw-r--      2433 2018-02-18 20:52 examples/test_transit_input/test_transit_input.model
-rw-rw-r--    189956 2018-02-18 20:52 examples/test_transit_input/test_transit_input.out
-rw-rw-r--    195400 2016-09-14 11:13 examples/test_transit_input/test_transit_input_plots.pdf
-rw-rw-r--      6924 2002-07-31 09:45 xmcsim/xgpl_3d.tcl
-rw-rw-r--     28895 2002-07-31 15:00 xmcsim/xgpl_main.tcl
-rw-rw-r--      2307 2002-07-31 09:45 xmcsim/xgpl
-rw-rw-r--     23543 2015-11-29 17:16 xmcsim/xmcsim
-rw-rw-r--        84 2002-07-31 09:45 xmcsim/xmcsim_sg
-rw-rw-r--        79 2002-07-31 09:45 xmcsim/xmcsim_sl
-rw-rw-r--     20678 2015-08-14 08:01 examples/SBML/Yeast.xml.txt
-rw-rw-r--      8017 2017-12-17 15:22 sim/yourcode.c
-rw-rw-r--      2023 2017-12-16 15:39 sim/yourcode.h

   MD5 (mcsim-6.2.0.tar.gz): 57b238a2decdac596ce7cdf6138f1363
  SHA1 (mcsim-6.2.0.tar.gz): 3a925c29e38e119daf7bfa43a943233314b63885
SHA256 (mcsim-6.2.0.tar.gz): c6a3a685dfb9a6f0e99760f2628a91cf40798f6f05d4577e49fade9d80664f7e

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