"Fossies" - the Fresh Open Source Software Archive

Contents of mcsim-5.6.6.tar.gz (21 Jan 22:48, 1922501 Bytes)

About: GNU MCSim is a simulation package to design your own statistical or simulation models, perform Monte Carlo simulations, do Bayesian inference through Markov Chain models.



Fossies path:  /linux/privat/mcsim-5.6.6.tar.gz   [Download | Doxygen docs | Diffs report | CLOC analysis]
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Basic infos (README, FAQ, INSTALL, ChangeLog, ...):
-rw-rw-r--        73 2013-03-13 14:55 AUTHORS
-rw-rw-r--         0 2010-02-25 16:48 ChangeLog
-rw-rw-r--     35147 2010-04-27 10:39 COPYING
-rw-rw-r--      9426 2011-01-17 00:43 INSTALL
-rw-rw-r--         0 2010-02-25 16:48 NEWS
-rw-rw-r--      1598 2015-12-05 19:53 README

Basic docs (manual pages, PDF-,HTML-,/doc/-files, ...):
-rw-rw-r--      1724 2017-01-21 21:45 doc/About-MCSim.txt
-rw-rw-r--    403655 2017-01-21 22:20 doc/mcsim.html
-rw-rw-r--    481739 2017-01-21 22:15 doc/mcsim.pdf
-rw-rw-r--    199677 2017-01-21 22:15 doc/mcsim.texi
-rw-rw-r--     28871 2000-05-23 10:08 doc/Programming-notes.txt
-rw-rw-r--      2819 2002-07-31 09:45 xmcsim/xgpl.doc
-rw-rw-r--      1228 2015-11-29 17:16 xmcsim/xmcsim.doc
-rw-rw-r--     14523 2016-12-30 15:51 examples/butadiene/butadiene.MCMC.inter.1.in
-rw-rw-r--     14524 2016-12-30 15:51 examples/butadiene/butadiene.MCMC.inter.2.in
-rw-rw-r--     14525 2016-12-30 15:51 examples/butadiene/butadiene.MCMC.inter.3.in
-rw-rw-r--     25445 2016-12-30 15:51 examples/butadiene/butadiene.MCMC.intra.1.in
-rw-rw-r--     25445 2016-12-30 15:51 examples/butadiene/butadiene.MCMC.intra.2.in
-rw-rw-r--     25445 2016-12-30 15:51 examples/butadiene/butadiene.MCMC.intra.3.in
-rw-rw-r--    195400 2016-09-14 11:13 examples/test_transit_input/test_transit_input_plots.pdf

All other files:
-rw-rw-r--      1838 2015-08-13 18:27 examples/1cpt/1cpt.MCMC1.in
-rw-rw-r--     14229 2015-08-13 18:27 examples/1cpt/1cpt.MCMC1.out
-rw-rw-r--      1969 2015-08-13 18:27 examples/1cpt/1cpt.MCMC2.in
-rw-rw-r--     17991 2015-08-13 18:27 examples/1cpt/1cpt.MCMC2.out
-rw-rw-r--      1984 2015-08-13 18:27 examples/1cpt/1cpt.MCMC3.in
-rw-rw-r--      9081 2015-08-13 18:27 examples/1cpt/1cpt.MCMC3.out
-rw-rw-r--      2183 2015-08-13 18:27 examples/1cpt/1cpt.MCMC4.in
-rw-rw-r--     21522 2015-08-13 18:27 examples/1cpt/1cpt.MCMC4.out
-rw-rw-r--      2133 2015-08-13 18:27 examples/1cpt/1cpt.MCMC5.in
-rw-rw-r--      4617 2015-08-13 18:27 examples/1cpt/1cpt.MCMC5.out
-rw-rw-r--      1835 2015-08-13 18:27 examples/1cpt/1cpt.model
-rw-rw-r--       984 2015-08-13 18:27 examples/1cpt/1cpt_no_noise.in
-rw-rw-r--       872 2015-08-13 18:27 examples/1cpt/1cpt_no_noise.out
-rw-rw-r--      1867 2015-08-13 18:27 examples/1cpt/1cpt.SO.in
-rw-rw-r--     71582 2015-08-13 18:27 examples/1cpt/1cpt.SO.out
-rw-rw-r--      1923 2015-11-29 18:03 examples/1cpt/1cpt.T.in
-rw-rw-r--    209608 2015-08-13 18:27 examples/1cpt/1cpt.T.out
-rw-rw-r--       996 2015-08-13 18:27 examples/1cpt/1cpt_w._noise.in
-rw-rw-r--       872 2015-08-13 18:27 examples/1cpt/1cpt_w._noise.out
-rw-rw-r--      1748 2015-08-14 08:01 examples/SBML/2cpt.model
-rw-rw-r--     17823 2016-12-09 15:06 examples/PBPK_ACAT/ACAT_like.model
-rw-rw-r--     44065 2017-01-21 21:51 aclocal.m4
-rwxr-xr-x      5826 2017-01-21 21:51 ar-lib
-rw-rw-r--      1188 2015-08-13 18:39 examples/binomial/binomial.fit.in
-rw-rw-r--       259 2015-08-13 18:39 examples/binomial/binomial.fit.out
-rw-rw-r--      1189 2015-08-13 18:39 examples/binomial/binomial.MCMC.in
-rw-rw-r--     37157 2015-08-13 18:39 examples/binomial/binomial.MCMC.out
-rw-rw-r--       540 2015-08-13 18:39 examples/binomial/binomial.model
-rw-rw-r--      2721 2015-08-14 07:35 examples/optimal_design/butadiene.model
-rw-rw-r--      5488 2016-12-30 15:51 examples/butadiene/butadiene.model
-rw-rw-r--      1930 2015-08-14 07:35 examples/optimal_design/butadiene.opt.in
-rw-rw-r--      1881 2015-08-14 07:35 examples/optimal_design/butadiene.opt.out
-rw-rw-r--     64159 2015-08-14 07:35 examples/optimal_design/butadiene.pop.sample
-rwxrwxr-x      3509 2015-08-14 08:01 examples/SBML/C_central.xml
-rwxr-xr-x      7333 2017-01-21 21:51 compile
-rwxr-xr-x     45297 2017-01-21 21:51 config.guess
-rw-rw-r--      3021 2017-01-21 21:51 config.h.in
-rw-rw-r--      3271 2017-01-21 21:51 config.h
-rwxr-xr-x     35564 2017-01-21 21:51 config.sub
-rwxrwxr-x      1353 2017-01-21 21:49 configure.ac
-rwxrwxr-x    455178 2017-01-21 21:51 configure
-rwxrwxr-x      3499 2015-08-14 08:01 examples/SBML/C_periph.xml
-rw-rw-r--      6516 2015-08-06 10:34 sim/delays.c
-rw-rw-r--      1579 2015-12-03 23:41 sim/delays.h
-rwxr-xr-x     23566 2017-01-21 21:51 depcomp
-rw-rw-r--       555 2015-08-13 19:43 examples/discrete/discrete.in
-rw-rw-r--      1065 2015-08-13 19:43 examples/discrete/discrete.model
-rw-rw-r--      3230 2015-08-13 19:43 examples/discrete/discrete.out
-rw-rw-r--      1905 2016-12-09 15:06 examples/PBPK_ACAT/Drug_X.simple.in
-rw-rw-r--     25911 2015-08-14 07:21 examples/err_in_var/err_in_var.in
-rw-rw-r--      2061 2015-08-14 07:21 examples/err_in_var/err_in_var.model
-rw-rw-r--      1172 2016-09-07 11:08 examples/err_in_var/err_in_var_ODE.in
-rw-rw-r--      1589 2016-09-07 11:08 examples/err_in_var/err_in_var_ODE_MCMC.in
-rw-rw-r--     68787 2016-09-07 11:08 examples/err_in_var/err_in_var_ODE_MCMC.out
-rw-rw-r--      1438 2016-09-07 11:08 examples/err_in_var/err_in_var_ODE.model
-rw-rw-r--       750 2016-09-07 11:08 examples/err_in_var/err_in_var_ODE.out
-rw-rw-r--     61869 2015-08-14 07:21 examples/err_in_var/err_in_var.out
-rw-rw-r--       700 2016-08-30 10:44 examples/events/event.in
-rw-rw-r--       400 2015-11-29 18:13 examples/events/event.model
-rw-rw-r--     20924 2015-11-29 18:13 examples/events/event.out
-rw-rw-r--     18491 2010-04-27 10:30 mod/getopt.c
-rw-rw-r--     18491 2010-05-29 22:55 sim/getopt.c
-rw-rw-r--      3980 2012-04-25 12:44 sim/getopt.h
-rw-rw-r--      4538 2012-04-25 13:04 mod/getopt.h
-rw-rw-r--      2783 2002-07-31 09:45 xmcsim/graph.xbm
-rw-rw-r--      1764 2014-09-28 10:02 mod/hungtype.h
-rw-rw-r--      1764 2014-09-28 10:24 sim/hungtype.h
-rwxr-xr-x     13997 2017-01-21 21:51 install-sh
-rw-rw-r--     18762 2015-12-20 17:12 sim/lex.c
-rw-rw-r--     32344 2016-01-01 11:44 mod/lex.c
-rw-rw-r--      4807 2016-01-01 11:44 mod/lexerr.c
-rw-rw-r--      7321 2015-12-24 12:13 sim/lexerr.c
-rw-rw-r--      1295 2013-04-28 09:51 mod/lexerr.h
-rw-rw-r--      1405 2012-04-25 12:42 sim/lexerr.h
-rw-rw-r--     17902 2016-09-11 17:41 sim/lexfn.c
-rw-rw-r--      9693 2010-04-27 10:30 mod/lexfn.c
-rw-rw-r--      2925 2012-04-25 13:08 mod/lexfn.h
-rw-rw-r--      5259 2016-10-15 15:35 sim/lexfn.h
-rw-rw-r--      6813 2015-12-20 17:11 sim/lex.h
-rw-rw-r--      8051 2016-01-01 11:44 mod/lex.h
-rw-r--r--    286793 2017-01-21 21:51 m4/libtool.m4
-rw-rw-r--       465 2015-08-14 07:25 examples/linear/linear.hier.mtc.in
-rw-rw-r--      1166 2015-08-14 07:25 examples/linear/linear.hier.mtc.out
-rw-rw-r--      2824 2015-08-14 07:25 examples/linear/linear.H.MCMC1.in
-rw-rw-r--     11922 2015-08-14 07:25 examples/linear/linear.H.MCMC1.out
-rw-rw-r--      2892 2015-08-14 07:25 examples/linear/linear.H.MCMC2.in
-rw-rw-r--     46743 2015-08-14 07:25 examples/linear/linear.H.MCMC2.out
-rw-rw-r--      2857 2015-08-14 07:25 examples/linear/linear.H.MCMC3.in
-rw-rw-r--     48215 2015-08-14 07:25 examples/linear/linear.H.MCMC3.out
-rw-rw-r--     88811 2015-08-14 07:25 examples/linear/linear.H.MCMC3.rst
-rw-rw-r--      2843 2015-08-14 07:25 examples/linear/linear.H.MCMC4.in
-rw-rw-r--     12311 2015-08-14 07:25 examples/linear/linear.H.MCMC4.out
-rw-rw-r--     36985 2015-08-14 07:25 examples/linear/linear.H.MCMC4.rst
-rw-rw-r--       426 2015-08-14 07:25 examples/linear/linear.in
-rw-rw-r--       983 2015-08-14 07:25 examples/linear/linear.MCMC1.in
-rw-rw-r--     12584 2015-08-14 07:25 examples/linear/linear.MCMC1.out
-rw-rw-r--      1268 2015-08-14 07:25 examples/linear/linear.MCMC2.in
-rw-rw-r--     12634 2015-08-14 07:25 examples/linear/linear.MCMC2.out
-rw-rw-r--       205 2015-08-14 07:25 examples/linear/linear.MCMC3.data
-rw-rw-r--       918 2015-08-14 07:25 examples/linear/linear.MCMC3.in
-rw-rw-r--     12634 2015-08-14 07:25 examples/linear/linear.MCMC3.out
-rw-rw-r--       564 2015-08-14 07:25 examples/linear/linear.model
-rw-rw-r--       426 2015-08-14 07:25 examples/linear/linear.out
-rw-rw-r--      5195 2010-05-29 22:55 sim/list.c
-rw-rw-r--      2633 2012-04-25 12:45 sim/list.h
-rw-rw-r--    147124 2015-10-25 23:36 sim/lsodes1.c
-rw-rw-r--     43945 2010-05-29 22:55 sim/lsodes2.c
-rw-rw-r--      5489 2010-05-29 22:55 sim/lsodes.h
-rw-r--r--    283684 2017-01-21 21:51 ltmain.sh
-rw-r--r--      6126 2017-01-21 21:51 m4/lt~obsolete.m4
-rw-r--r--     12347 2017-01-21 21:51 m4/ltoptions.m4
-rw-r--r--      4372 2017-01-21 21:51 m4/ltsugar.m4
-rw-r--r--       690 2017-01-21 21:51 m4/ltversion.m4
-rwxrwxr-x       277 2015-12-05 20:36 Makefile.am
-rwxrwxr-x       355 2015-12-06 08:30 mod/Makefile.am
-rwxrwxr-x       865 2015-12-27 20:44 sim/Makefile.am
-rw-rw-r--     22171 2017-01-21 21:51 mod/Makefile.in
-rw-rw-r--     26046 2017-01-21 21:51 sim/Makefile.in
-rw-rw-r--     40459 2017-01-21 21:51 Makefile.in
-rwxrwxr-x      1108 2016-12-20 09:50 examples/perc/Makefile.in
-rw-rw-r--       344 2017-01-21 21:52 examples/perc/Makefile.log
-rwxrwxr-x      1133 2017-01-21 21:51 examples/perc/Makefile
-rw-rw-r--        82 2017-01-21 21:52 examples/perc/Makefile.trs
-rw-rw-r--       156 2002-07-31 09:45 xmcsim/make_index
-rw-rw-r--       479 2016-12-18 15:10 sim/makemcsimd.in
-rwxrwxr-x       505 2016-01-30 08:39 sim/makemcsim.in
-rwxrwxr-x       533 2016-01-30 08:39 sim/makemcsims.in
-rw-rw-r--      7002 2010-05-29 22:55 sim/matutil.c
-rw-rw-r--      1647 2012-04-25 12:46 sim/matutil.h
-rw-rw-r--      2096 2010-05-29 22:55 sim/matutilo.c
-rw-rw-r--      1243 2010-05-29 22:55 sim/matutilo.h
-rw-rw-r--        53 2002-07-31 09:45 xmcsim/mckill
-rw-rw-r--       474 2017-01-21 21:52 examples/perc/mcsim.log
-rwxrwxr-x    267233 2017-01-21 21:52 examples/perc/mcsim.perc
-rw-rw-r--     95861 2017-01-05 16:20 sim/mh.c
-rw-rw-r--      6301 2016-12-21 22:42 sim/mh.h
-rwxr-xr-x      6872 2017-01-21 21:51 missing
-rw-rw-r--      9808 2014-08-31 21:03 mod/mod.c
-rw-rw-r--     25665 2015-12-03 23:54 mod/modd.c
-rw-rw-r--      2126 2012-04-25 13:09 mod/modd.h
-rw-rw-r--     17289 2017-01-21 21:52 examples/perc/model.c
-rw-rw-r--     24557 2016-10-16 15:26 sim/modelu.c
-rw-rw-r--      3024 2015-08-06 10:35 sim/modelu.h
-rw-rw-r--      5519 2017-01-21 21:17 mod/mod.h
-rw-rw-r--     16629 2016-01-01 11:44 mod/modi.c
-rw-rw-r--      4184 2015-10-25 22:50 sim/modiface.h
-rw-rw-r--      1935 2012-04-25 13:10 mod/modi.h
-rw-rw-r--     44150 2015-12-20 17:19 mod/modiSBML2.c
-rw-rw-r--     45326 2011-01-17 01:02 mod/modiSBML.c
-rw-rw-r--      1840 2012-04-25 13:11 mod/modiSBML.h
-rw-rw-r--     54467 2017-01-21 19:30 mod/modo.c
-rw-rw-r--      4682 2015-10-15 12:25 mod/modo.h
-rw-rw-r--       740 2015-08-14 07:31 examples/multistage/multistage.model
-rw-rw-r--     26771 2015-12-24 12:12 sim/optdsign.c
-rw-rw-r--      2740 2012-04-25 12:51 sim/optdsign.h
-rw-rw-r--       639 2015-08-14 07:38 examples/oscillators/oscillators.in
-rw-rw-r--       830 2015-08-14 07:38 examples/oscillators/oscillators.model
-rw-rw-r--     21097 2015-08-14 07:38 examples/oscillators/oscillators.out
-rw-rw-r--      1902 2016-08-19 09:22 examples/PBPK_base/pbpk_man.in
-rw-rw-r--     20848 2015-08-14 07:40 examples/PBPK_base/pbpk_man.model
-rw-rw-r--     52303 2016-08-19 09:22 examples/PBPK_base/pbpk_man.out
-rw-rw-r--     38704 2015-08-14 07:40 examples/PBPK_base/pbpk_pregnant.model
-rw-rw-r--      5809 2016-08-19 09:22 examples/PBPK_base/pbpk_woman.in
-rw-rw-r--     20860 2015-08-14 07:40 examples/PBPK_base/pbpk_woman.model
-rw-rw-r--     47426 2016-08-19 09:22 examples/PBPK_base/pbpk_woman.out
-rw-rw-r--      1402 2015-08-14 07:43 examples/pde1/pde1.in
-rw-rw-r--      1793 2015-08-14 07:43 examples/pde1/pde1.model
-rw-rw-r--      3557 2015-08-14 07:43 examples/pde1/pde1.out
-rw-rw-r--      1462 2015-08-14 07:46 examples/pde2/pde2.in
-rw-rw-r--       721 2015-08-14 07:46 examples/pde2/pde2.model
-rw-rw-r--      3557 2015-08-14 07:46 examples/pde2/pde2.out
-rw-rw-r--      6842 2015-12-04 11:31 examples/delay_diff_eqns/perc_delay.model
-rw-rw-r--       445 2015-08-13 19:40 examples/delay_diff_eqns/perc.in
-rw-rw-r--      2042 2015-10-25 22:48 examples/perc/perc.lsodes.in
-rw-rw-r--       508 2015-08-14 07:49 examples/perc/perc.lsodes.out
-rw-rw-r--     12275 2015-10-25 22:45 examples/perc/perc.model
-rw-rw-r--      2582 2015-08-14 07:49 examples/perc/perc.mtc.in
-rw-rw-r--      1485 2015-08-14 07:49 examples/perc/perc.mtc.out
-rw-rw-r--       881 2015-08-14 07:49 examples/perc/perc.ndoses.in
-rw-rw-r--       903 2015-08-14 07:49 examples/perc/perc.ndoses.out
-rw-rw-r--       348 2015-08-14 07:49 examples/perc/perc.setpoint.dat
-rw-rw-r--      1763 2015-08-14 07:49 examples/perc/perc.setpoint.in
-rw-rw-r--       598 2015-08-14 07:49 examples/perc/perc.setpoint.out
-rw-rw-r--      1536 2016-12-30 15:52 examples/butadiene/R script for trajectory plots.R
-rw-rw-r--      2442 2015-08-14 07:53 examples/probit/probit.in
-rw-rw-r--       791 2015-08-14 07:53 examples/probit/probit.model
-rw-rw-r--      7252 2015-08-14 07:53 examples/probit/probit.out
-rw-rw-r--       328 2015-08-14 08:01 examples/SBML/pure_SBML.in
-rw-rw-r--     39806 2012-01-22 09:41 sim/random.c
-rw-rw-r--      3810 2012-04-25 12:51 sim/random.h
-rw-rw-r--      1527 2015-08-14 07:57 examples/random_numbers/random.in
-rw-rw-r--       699 2015-08-14 07:57 examples/random_numbers/random.model
-rw-rw-r--      2268 2015-08-14 07:57 examples/random_numbers/random.out
-rw-rw-r--     17269 2016-05-09 16:25 examples/perc/ref_model.c
-rw-rw-r--      2024 2015-12-20 16:46 examples/R/running_simple.R
-rw-rw-r--       543 2015-08-14 08:01 examples/SBML/SBML_List.in
-rw-rw-r--     23799 2015-12-27 20:36 sim/sim.c
-rw-rw-r--     17932 2017-01-21 21:31 sim/sim.h
-rw-rw-r--     71252 2016-12-21 22:38 sim/simi.c
-rw-rw-r--      3310 2012-04-25 12:53 sim/simi.h
-rw-rw-r--     14271 2016-12-21 22:39 sim/siminit.c
-rw-rw-r--      1876 2012-04-25 12:54 sim/siminit.h
-rw-rw-r--     11153 2016-12-18 11:23 sim/simmonte.c
-rw-rw-r--      1606 2010-05-29 22:55 sim/simmonte.h
-rw-rw-r--      8504 2010-05-29 22:55 sim/simo.c
-rw-rw-r--      1595 2012-04-25 13:01 sim/simo.h
-rw-rw-r--       506 2017-01-21 21:52 examples/perc/sim.out
-rw-rw-r--       561 2015-08-14 07:55 examples/R/simple.model
-rw-rw-r--      1870 2010-05-29 22:55 sim/strutil.c
-rw-rw-r--      1910 2010-04-27 10:30 mod/strutil.c
-rw-rw-r--      1590 2010-04-27 10:30 mod/strutil.h
-rw-rw-r--      1633 2010-05-29 22:55 sim/strutil.h
-rw-rw-r--      2058 2002-07-31 09:45 xmcsim/tclIndex
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-rw-rw-r--      1853 2016-09-14 11:13 examples/test_transit_input/test_transit_input.in
-rw-rw-r--      2515 2016-09-14 11:13 examples/test_transit_input/test_transit_input.model
-rw-rw-r--    189911 2016-09-14 11:13 examples/test_transit_input/test_transit_input.out
-rw-rw-r--      6924 2002-07-31 09:45 xmcsim/xgpl_3d.tcl
-rw-rw-r--     28895 2002-07-31 15:00 xmcsim/xgpl_main.tcl
-rw-rw-r--      2307 2002-07-31 09:45 xmcsim/xgpl
-rw-rw-r--     23543 2015-11-29 17:16 xmcsim/xmcsim
-rw-rw-r--        84 2002-07-31 09:45 xmcsim/xmcsim_sg
-rw-rw-r--        79 2002-07-31 09:45 xmcsim/xmcsim_sl
-rw-rw-r--     20678 2015-08-14 08:01 examples/SBML/Yeast.xml.txt
-rw-rw-r--      8134 2015-08-06 10:42 sim/yourcode.c
-rw-rw-r--      2162 2015-08-06 10:40 sim/yourcode.h

   MD5 (mcsim-5.6.6.tar.gz): 27a5112260ac364528687adf74ca8140
  SHA1 (mcsim-5.6.6.tar.gz): cc16d36763234754cc9a630e2b98fd41669fb475
SHA256 (mcsim-5.6.6.tar.gz): 98fb53dc96c6076c305247e72959e0491b2ae5e699acf9d8168e4df4b047b703

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