"Fossies" - the Fresh Open Source Software Archive

Contents of BALL-1.4.2.tar.gz (28 Jan 2013, 25458643 Bytes)

About: BALL (Biochemical Algorithms Library) is an application framework in C++ that provides an extensive set of data structures as well as classes for Molecular Mechanics, advanced solvation methods, comparison and analysis of protein structures, file import/export, and visualization .



Fossies path:  /linux/privat/BALL-1.4.2.tar.gz   [Download | Doxygen docs | CLOC analysis]
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Member sort order:  docs related (infos|docs|other) | original | size (top100) | date | path | name | ext | top-path files

Basic infos (README, FAQ, INSTALL, ChangeLog, ...):
-rw-rw-r--       240 2013-01-25 11:34 ChangeLog
-rw-rw-r--      1221 2013-01-25 11:34 COPYRIGHT
-rw-rw-r--      1777 2013-01-25 11:34 README
-rw-rw-r--      1503 2013-01-25 11:34 doc/TUTORIAL/faq.tex
-rwxrwxr-x      7535 2013-01-25 11:34 doc/QuEasyViz/featureSelection.html
-rw-rw-r--       507 2013-01-25 11:34 doc/html_includes/INTRO.html
-rw-rw-r--       966 2013-01-25 11:34 source/APPLICATIONS/README

Basic docs (manual pages, PDF-,HTML-,/doc/-files, ...):
-rw-rw-r--     44464 2013-01-25 11:34 doc/classes
-rw-rw-r--      3481 2013-01-25 11:34 doc/TUTORIAL/BALL_structure.pdf
-rw-rw-r--         0 2013-01-25 11:34 doc/html_includes/banner.inc
-rw-rw-r--       514 2013-01-25 11:34 source/TUTORIAL/bounding_box_example.hin
-rw-rw-r--       388 2013-01-25 11:34 doc/html_includes/classFooter.inc
-rw-rw-r--       693 2013-01-25 11:34 doc/html_includes/classHeader.inc
-rw-rw-r--     19291 2013-01-25 11:34 doc/misc/coding_style.tex
-rw-rw-r--      8715 2013-01-25 11:34 doc/BALLView/datasetControl.html
-rw-rw-r--       628 2013-01-25 11:34 doc/internal/demo01.html
-rw-rw-r--       778 2013-01-25 11:34 doc/internal/demo02.html
-rw-rw-r--       695 2013-01-25 11:34 doc/internal/demo03.html
-rw-rw-r--       537 2013-01-25 11:34 doc/internal/demo04.html
-rw-rw-r--       638 2013-01-25 11:34 doc/internal/demo05.html
-rw-rw-r--      1058 2013-01-25 11:34 doc/internal/demo06.html
-rw-rw-r--       749 2013-01-25 11:34 doc/internal/demo07.html
-rw-rw-r--       567 2013-01-25 11:34 doc/internal/demo08.html
-rw-rw-r--       594 2013-01-25 11:34 doc/internal/demo09.html
-rw-rw-r--       954 2013-01-25 11:34 doc/internal/demo10.html
-rw-rw-r--       617 2013-01-25 11:34 doc/internal/demo11.html
-rw-rw-r--      1071 2013-01-25 11:34 doc/internal/demo12.html
-rw-rw-r--       904 2013-01-25 11:34 doc/internal/demo13.html
-rw-rw-r--      1063 2013-01-25 11:34 doc/internal/demo14.html
-rw-rw-r--       688 2013-01-25 11:34 doc/internal/demo15.html
-rw-rw-r--       686 2013-01-25 11:34 doc/internal/demo16.html
-rw-rw-r--       867 2013-01-25 11:34 doc/internal/demo17.html
-rw-rw-r--      5044 2013-01-25 11:34 doc/BALLView/displayProperties.html
-rw-rw-r--     13987 2013-01-25 11:34 doc/TUTORIAL/example1.tex
-rw-rw-r--      4496 2013-01-25 11:34 doc/TUTORIAL/example2.tex
-rw-rw-r--     10251 2013-01-25 11:34 doc/TUTORIAL/example3.tex
-rw-rw-r--      3315 2013-01-25 11:34 doc/TUTORIAL/example4.tex
-rw-rw-r--      6582 2013-01-25 11:34 doc/TUTORIAL/example5.tex
-rw-rw-r--        23 2013-01-25 11:34 doc/doxygen/footer.html
-rw-rw-r--      1189 2013-01-25 11:34 doc/TUTORIAL/foundation-classes.tex
-rw-rw-r--      5634 2013-01-25 11:34 doc/BALLView/geometricControl.html
-rw-rw-r--      9928 2013-01-25 11:34 doc/TUTORIAL/glBoundingBox.tex
-rw-rw-r--       269 2013-01-25 11:34 doc/doxygen/header.html
-rw-rw-r--       387 2013-01-25 11:34 doc/html_includes/hierFooter.inc
-rw-rw-r--       732 2013-01-25 11:34 doc/html_includes/hierHeader.inc
-rw-rw-r--      1090 2013-01-25 11:34 doc/BALLView/hotkeys.html
-rw-rw-r--       388 2013-01-25 11:34 doc/html_includes/indexFooter.inc
-rw-rw-r--       724 2013-01-25 11:34 doc/html_includes/indexHeader.inc
-rw-rw-r--      5758 2013-01-25 11:34 doc/BALLView/index.html
-rw-rw-r--       225 2013-01-25 11:34 doc/TUTORIAL/indexstyle.ist
-rw-rw-r--     14974 2013-01-25 11:34 doc/TUTORIAL/installation.tex
-rw-rw-r--      6410 2013-01-25 11:34 doc/TUTORIAL/introduction.tex
-rw-rw-r--      6144 2013-01-25 11:34 doc/TUTORIAL/kernel-data-structures.pdf
-rw-rw-r--      7420 2013-01-25 11:34 doc/TUTORIAL/kernel.tex
-rw-rw-r--        72 2013-01-25 11:34 doc/TUTORIAL/latex2html-init.BALL
-rw-rw-r--     92306 2013-01-25 11:34 doc/TUTORIAL/logo.pdf
-rw-rw-r--      1400 2013-01-25 11:34 doc/BALLView/logView.html
-rw-rw-r--     12094 2013-01-25 11:34 doc/TUTORIAL/macros.tex
-rw-rw-r--      4818 2013-01-25 11:34 doc/BALLView/mm.html
-rw-rw-r--      9513 2013-01-25 11:34 doc/BALLView/molecularControl.html
-rw-rw-r--     51516 2013-01-25 11:34 source/TUTORIAL/pdb4pti.ent
-rw-rw-r--      1781 2013-01-25 11:34 doc/QuEasyViz/prediction.html
-rw-rw-r--      2651 2013-01-25 11:34 doc/QuEasyViz/preferences.html
-rw-rw-r--      3576 2013-01-25 11:34 doc/TUTORIAL/problem-domain.pdf
-rw-rw-r--      7816 2013-01-25 11:34 doc/BALLView/pythonInterpreter.html
-rw-rw-r--      5334 2013-01-25 11:34 doc/TUTORIAL/python.tex
-rw-rw-r--     11787 2013-01-25 11:34 doc/TUTORIAL/representation.pdf
-rw-rw-r--     11334 2013-01-25 11:34 doc/BALLView/scene.html
-rw-rw-r--      2231 2013-01-25 11:34 doc/TUTORIAL/testing.tex
-rw-rw-r--     12146 2013-01-25 11:34 doc/BALLView/tips.html
-rw-rw-r--     69108 2013-01-25 11:34 doc/TUTORIAL/tut1_screenshot.pdf
-rw-rw-r--      1187 2013-01-25 11:34 doc/internal/tutorial01.html
-rw-rw-r--       993 2013-01-25 11:34 doc/internal/tutorial02.html
-rw-rw-r--      1102 2013-01-25 11:34 doc/internal/tutorial03.html
-rw-rw-r--      1148 2013-01-25 11:34 doc/internal/tutorial04.html
-rw-rw-r--      1143 2013-01-25 11:34 doc/internal/tutorial05.html
-rw-rw-r--       840 2013-01-25 11:34 doc/internal/tutorial06.html
-rw-rw-r--       780 2013-01-25 11:34 doc/internal/tutorial07.html
-rw-rw-r--      1056 2013-01-25 11:34 doc/internal/tutorial08.html
-rw-rw-r--       956 2013-01-25 11:34 doc/internal/tutorial09.html
-rw-rw-r--       618 2013-01-25 11:34 doc/internal/tutorial10.html
-rw-rw-r--      2079 2013-01-25 11:34 doc/TUTORIAL/tutorial.tex
-rw-rw-r--     47723 2013-01-25 11:34 doc/TUTORIAL/view.tex

First 50 (from 3362) other files:
-rw-rw-r--     18111 2013-01-25 11:34 MacOSX/BALLView-package.pmdoc/01ballview-contents.xml
-rw-rw-r--     18742 2013-01-25 11:34 MacOSX/BALLView-package-spnav.pmdoc/01ballview-contents.xml
-rw-rw-r--      1042 2013-01-25 11:34 MacOSX/BALLView-package.pmdoc/01ballview.xml
-rw-rw-r--       920 2013-01-25 11:34 MacOSX/BALLView-package-spnav.pmdoc/01ballview.xml
-rw-rw-r--       224 2013-01-25 11:34 MacOSX/BALLView-package-spnav.pmdoc/02plugins-contents.xml
-rw-rw-r--       799 2013-01-25 11:34 MacOSX/BALLView-package-spnav.pmdoc/02plugins.xml
-rw-rw-r--    126198 2013-01-25 11:34 data/structures/1A1F.pdb
-rw-rw-r--     74405 2013-01-25 11:34 source/TEST/data/1BNA_2.hin
-rw-rw-r--     43868 2013-01-25 11:34 source/TEST/data/1BNA.hin
-rw-rw-r--     50185 2013-01-25 11:34 source/TEST/data/1BNA.pdb
-rw-rw-r--    564496 2013-01-25 11:34 source/TEST/data/2ovc.ccp4
-rw-rw-r--    405234 2013-01-25 11:34 source/TEST/data/2ptc_H.pdb
-rw-rw-r--        73 2013-01-25 11:34 source/TEST/data/6_12-test.hin
-rw-rw-r--       116 2013-01-25 11:34 source/TEST/data/6_12-test.options
-rw-rw-r--      3767 2013-01-25 11:34 source/TEST/data/6_12-test.rdf-fake.ini
-rw-rw-r--     14007 2013-01-25 11:34 source/TEST/data/6_12-test.rdf.ini
-rw-rw-r--       453 2013-01-25 11:34 source/TEST/data/6_12-test.rul
-rw-rw-r--       225 2013-01-25 11:34 source/TEST/data/6_12-test.solvent.ini
-rw-rw-r--      3062 2013-01-25 11:34 source/TEST/data/AAG.mol2
-rw-rw-r--      1589 2013-01-25 11:34 source/TEST/data/AA.hin
-rwxrwxr-x     16051 2013-01-25 11:34 source/APPLICATIONS/BALLVIEW/aboutDialog.ui
-rw-rw-r--      1231 2013-01-25 11:34 data/fragments/ACE.db
-rw-rw-r--      2139 2013-01-25 11:34 data/energy/ACE_parameters.dat
-rw-rw-r--    114975 2013-01-25 11:34 source/TEST/data/ACE_test_A.pdb
-rw-rw-r--     32588 2013-01-25 11:34 source/TEST/data/ACE_test_B.pdb
-rw-rw-r--      7198 2013-01-25 11:34 data/energy/ACE_types.dat
-rw-rw-r--      3978 2013-01-25 11:34 data/fragments/A.db
-rw-rw-r--      4876 2013-01-25 11:34 source/TEST/AddCartoonModel_test.C
-rw-rw-r--     13490 2013-01-25 11:34 source/STRUCTURE/addHydrogenProcessor.C
-rw-rw-r--      2241 2013-01-25 11:34 include/BALL/STRUCTURE/addHydrogenProcessor.h
-rw-rw-r--      2306 2013-01-25 11:34 source/EXAMPLES/PYTHON/BALLView/add_hydrogens_BV.py
-rw-rw-r--      2894 2013-01-25 11:34 source/APPLICATIONS/UTILITIES/add_hydrogens.C
-rw-rw-r--      3720 2013-01-25 11:34 source/EXAMPLES/addHydrogens.C
-rw-rw-r--      3040 2013-01-25 11:34 source/EXAMPLES/PYTHON/howtos/add_hydrogens.py
-rw-rw-r--      3120 2013-01-25 11:34 source/EXAMPLES/PYTHON/UTILITIES/add_hydrogens.py
-rw-rw-r--      2015 2013-01-25 11:34 source/APPLICATIONS/DB/add_structure.C
-rw-rw-r--      3020 2013-01-25 11:34 source/TEST/data/AG.pdb
-rw-rw-r--    205316 2013-01-25 11:34 data/structures/alaala.dcd
-rw-rw-r--      1589 2013-01-25 11:34 source/APPLICATIONS/BALLVIEW/AlaAla.hin
-rw-rw-r--      1700 2013-01-25 11:34 data/structures/AlaAla.hin
-rw-rw-r--      2413 2013-01-25 11:34 data/fragments/ALA.db
-rw-rw-r--      2200 2013-01-25 11:34 source/TEST/data/AlaGlySer2.hin
-rw-rw-r--      5827 2013-01-25 11:34 source/TEST/data/AlaGlySer__CysHisMet.hin
-rw-rw-r--      2432 2013-01-25 11:34 source/TEST/data/AlaGlySer.hin
-rw-rw-r--      2219 2013-01-25 11:34 source/TEST/data/AlaGlySer_PARSE_charges.hin
-rw-rw-r--      5149 2013-01-25 11:34 data/Amber/all94.dat
-rw-rw-r--      6261 2013-01-25 11:34 data/Amber/all_amber94.siz
-rw-rw-r--      4445 2013-01-25 11:34 data/Amber/all_amino94.dat
-rw-rw-r--     59536 2013-01-25 11:34 data/Amber/all_amino94.in
-rw-rw-r--      3995 2013-01-25 11:34 data/Amber/all_aminoct94.dat
...

A hint: In order to limit the size of this page, in total 3312 archive member files - probably not "information" or "documentation" related - are omitted here. But all those files can be found in the complete docs-related index file or in the originally, by date, by pathname, by filename or by file extension sorted index files (roughly file size each: 0.7 MB).
   MD5 (BALL-1.4.2.tar.gz): fd859f257fa6b528d5e1cad4c98668c7
  SHA1 (BALL-1.4.2.tar.gz): 57b2c8b8dbf8c829ddf232e7d1a5626cb27fd9c7
SHA256 (BALL-1.4.2.tar.gz): ff699744e498cae6cecd194e23441eba20a15d68b0cde5fd388eb5a752181539

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