filesystem.cpp File Reference

#include "filesystem/filesystem.hpp"
#include "filesystem/path.hpp"
#include "filesystem/collection_iterator.hpp"
#include "rodsClient.h"
#include "specificQuery.h"
#include "objStat.h"
#include "dataObjCopy.h"
#include "dataObjRename.h"
#include "dataObjUnlink.h"
#include "dataObjChksum.h"
#include "openCollection.h"
#include "closeCollection.h"
#include "readCollection.h"
#include "modAccessControl.h"
#include "collCreate.h"
#include "modColl.h"
#include "rmColl.h"
#include "modAVUMetadata.h"
#include "data_object_modify_info.h"
#include "rcMisc.h"
#include "rodsErrorTable.h"
#include "irods_log.hpp"
#include "irods_error.hpp"
#include "irods_exception.hpp"
#include "irods_query.hpp"
#include "irods_at_scope_exit.hpp"
#include "query_builder.hpp"
#include <boost/optional.hpp>
#include "fmt/format.h"
#include <cctype>
#include <cstring>
#include <string>
#include <iterator>
#include <exception>
#include <sstream>
#include <iomanip>
#include <algorithm>

Include dependency graph for filesystem.cpp:

Go to the source code of this file.

Namespaces
	irods
	irods::experimental
	irods::experimental::filesystem
	irods::experimental::filesystem::client

Functions
auto	irods::experimental::filesystem::client::copy (rcComm_t &_comm, const path &_from, const path &_to, copy_options _options=copy_options::none) -> void
auto	irods::experimental::filesystem::client::copy_data_object (rcComm_t &_comm, const path &_from, const path &_to, copy_options _options=copy_options::none) -> bool
auto	irods::experimental::filesystem::client::create_collection (rcComm_t &_comm, const path &_p) -> bool
auto	irods::experimental::filesystem::client::create_collection (rcComm_t &_comm, const path &_p, const path &_existing_p) -> bool
auto	irods::experimental::filesystem::client::create_collections (rcComm_t &_comm, const path &_p) -> bool
auto	irods::experimental::filesystem::client::exists (object_status _s) noexcept -> bool
auto	irods::experimental::filesystem::client::exists (rcComm_t &_comm, const path &_p) -> bool
auto	irods::experimental::filesystem::client::equivalent (rcComm_t &_comm, const path &_p1, const path &_p2) -> bool
auto	irods::experimental::filesystem::client::data_object_size (rcComm_t &_comm, const path &_p) -> std::uintmax_t
auto	irods::experimental::filesystem::client::is_collection (object_status _s) noexcept -> bool
auto	irods::experimental::filesystem::client::is_collection (rcComm_t &_comm, const path &_p) -> bool
auto	irods::experimental::filesystem::client::is_empty (rcComm_t &_comm, const path &_p) -> bool
auto	irods::experimental::filesystem::client::is_other (object_status _s) noexcept -> bool
auto	irods::experimental::filesystem::client::is_other (rcComm_t &_comm, const path &_p) -> bool
auto	irods::experimental::filesystem::client::is_data_object (object_status _s) noexcept -> bool
auto	irods::experimental::filesystem::client::is_data_object (rcComm_t &_comm, const path &_p) -> bool
auto	irods::experimental::filesystem::client::last_write_time (rcComm_t &_comm, const path &_p) -> object_time_type
auto	irods::experimental::filesystem::client::last_write_time (rcComm_t &_comm, const path &_p, object_time_type _new_time) -> void
auto	irods::experimental::filesystem::client::remove (rcComm_t &_comm, const path &_p, remove_options _opts=remove_options::none) -> bool
auto	irods::experimental::filesystem::client::remove_all (rcComm_t &_comm, const path &_p, remove_options _opts=remove_options::none) -> std::uintmax_t
auto	irods::experimental::filesystem::client::permissions (rcComm_t &_comm, const path &_p, const std::string &_user_or_group, perms _prms) -> void
auto	irods::experimental::filesystem::client::rename (rcComm_t &_comm, const path &_from, const path &_to) -> void
auto	irods::experimental::filesystem::client::move (rcComm_t &_comm, const path &_old_p, const path &_new_p) -> void
auto	irods::experimental::filesystem::client::data_object_checksum (rcComm_t &_comm, const path &_path, const boost::variant< int, replica_number > &_replica_number, verification_calculation _calculation=verification_calculation::none) -> std::vector< checksum >
auto	irods::experimental::filesystem::client::status (rcComm_t &_comm, const path &_p) -> object_status
auto	irods::experimental::filesystem::client::status_known (object_status _s) noexcept -> bool
auto	irods::experimental::filesystem::client::get_metadata (rcComm_t &_comm, const path &_path) -> std::vector< metadata >
auto	irods::experimental::filesystem::client::set_metadata (rcComm_t &_comm, const path &_path, const metadata &_metadata) -> void
auto	irods::experimental::filesystem::client::add_metadata (rcComm_t &_comm, const path &_path, const metadata &_metadata) -> void
auto	irods::experimental::filesystem::client::remove_metadata (rcComm_t &_comm, const path &_path, const metadata &_metadata) -> void

Variable Documentation

ctime

long long ctime

Definition at line 108 of file filesystem.cpp.

Referenced by rodsLog(), and rodsLogAndErrorMsg().

error

int error

Definition at line 101 of file filesystem.cpp.

Referenced by irods::assert_error(), irods::assert_pass(), irods::plugin_base::call(), irods::dynamic_operation_execution_manager< T, C, DONT_AUDIT_RULE >::call(), irods::api_entry::call_handler(), irods::check_sent_sid(), irods::client_server_negotiation_for_server(), createErrorNode(), db_check_auth_op(), db_make_limited_pw_op(), db_make_temp_pw_op(), db_open_op(), irods::rule_engine_context_manager< T, C, AUDIT_RULE >::exec_rule(), irods::pluggable_rule_engine< default_re_ctx >::exec_rule(), irods::pluggable_rule_engine< default_re_ctx >::exec_rule_expression(), irods::pluggable_rule_engine< default_re_ctx >::exec_rule_text(), fileConcatenate(), irods::forward_server_control_command(), get_catalog_service_role(), get_default_rule_plugin_instance(), irods::environment_properties::get_property(), get_resc_id_cond_for_hier_cond(), get_strict_acls(), getMutexName(), getSharedMemoryName(), irods::impostor_resource::impostor_resource(), instantiate_shared_memory(), irods::kill_server(), list_rule_plugin_instances(), irods::pluggable_rule_engine< default_re_ctx >::list_rules(), irods::configuration_parser::load_json_object(), matchPattern(), native_auth_establish_context(), non_blockingFileCopyPlugin(), obfRmPw(), irods::serialize::operator()(), osauth_auth_establish_context(), pam_auth_client_start(), parse_program_options(), parseAndComputeRuleAdapter(), parseAndComputeRuleNewEnv(), plugin_factory(), irods::server_control_executor::process_operation(), repl_file_rebalance(), irods::pluggable_rule_engine< default_re_ctx >::rule_exists(), irods::server_operation_shutdown(), setRECacheSaltFromEnv(), start(), irods::pluggable_rule_engine< default_re_ctx >::start_operation(), irods::pluggable_rule_engine< default_re_ctx >::stop_operation(), typeFunction3(), typeRule(), uninstantiate_shared_memory(), and unix_file_copy().

id

long long id

Definition at line 105 of file filesystem.cpp.

Referenced by irods.pyparsing.ParserElement::__hash__(), irods::resource_manager::hier_to_leaf_id(), and irods::resource_to_kvp().

mode

int mode

Definition at line 104 of file filesystem.cpp.

Referenced by _l3FileStage(), _l3Open(), allocAndFillFileDesc(), chlDebug(), chlDebugGenQuery(), chlDebugGenUpdate(), cmlDebug(), db_debug_op(), db_mod_data_obj_meta_op(), functionParameters(), irods_file_open(), isRuleGenSyntax(), l3FileStage(), l3Open(), mkDirForFilePath(), mkdirR(), mkFileDirR(), mock_archive_mkdir_r(), mockArchiveCopyPlugin(), native_auth_establish_context(), nextRuleSection(), nextString2String(), nextStringString(), non_blocking_file_mkdir_r(), non_blockingFileCopyPlugin(), osauth_auth_establish_context(), pam_auth_client_start(), univ_mss_file_chmod(), univ_mss_file_mkdir(), unix_file_copy(), unix_file_mkdir_r(), and unix_file_rename().

mtime

long long mtime

Definition at line 109 of file filesystem.cpp.

no_trash

bool no_trash = false

Definition at line 250 of file filesystem.cpp.

Referenced by irods::experimental::filesystem::client::remove(), irods::experimental::filesystem::client::remove_all(), and rmdirCollUtil().

owner_name

std::string owner_name

Definition at line 106 of file filesystem.cpp.

owner_zone

std::string owner_zone

Definition at line 107 of file filesystem.cpp.

prms

std::vector<entity_permission> prms

Definition at line 110 of file filesystem.cpp.

recursive

bool recursive = false

Definition at line 251 of file filesystem.cpp.

Referenced by irods::experimental::filesystem::client::remove(), and irods::experimental::filesystem::client::remove_all().

size

long long size

Definition at line 102 of file filesystem.cpp.

Referenced by add_resc_hier_name_to_query_out(), addStrArray(), allocSubtrees(), cllExecSqlWithResultBV(), columnToString(), copyCache(), escape_path(), fillPortalTransferInp(), functionApplicationToString(), get_next_valid_child_resource(), get_script_output_single_line(), getRandomArray(), keyBuf(), irods::make_connection_pool(), newCollRes(), newCollRes2(), newHashTable(), newHashTable2(), newStringBasedRes(), prepareServerSharedMemory(), region_alloc(), ruleToString(), setCacheAddress(), smsi_query(), smsi_str(), unbunBulkBuf(), updateCache(), and writeKeyValPairs().

type

int type

Definition at line 103 of file filesystem.cpp.

Referenced by irods.pyparsing.ParserElement::__add__(), irods.pyparsing.ParserElement::__and__(), irods.pyparsing.ParseBaseException::__dir__(), irods.pyparsing.ParseResults::__dir__(), irods.pyparsing.ParserElement::__mul__(), irods.pyparsing.ParserElement::__or__(), irods.pyparsing.ParserElement::__radd__(), irods.pyparsing.ParserElement::__rand__(), irods.pyparsing.ParserElement::__ror__(), irods.pyparsing.ParserElement::__rsub__(), irods.pyparsing.ParserElement::__rxor__(), irods.pyparsing.ParserElement::__sub__(), irods.pyparsing.ParserElement::__xor__(), _rsDataObjLock(), addMsParam(), addMsParamToArray(), irods.six::callable(), checkAndGetObjectId(), irods.pypyodbc.Cursor::columns(), irods::configuration_parser::convert_json(), convertResToString(), convertToExprType(), createPhyBundleDataObj(), dereference(), evaluateExpression3(), irods.pypyodbc.Cursor::execdirect(), executeFilesystemLockCommand(), fillMsParam(), irods.pypyodbc.Cursor::foreignKeys(), fsDataObjLock(), fsDataObjUnlock(), irods::structured_object::get_re_vars(), irods.pypyodbc::get_type(), getElemType(), getLockCmdAndType(), getMsParamByType(), getSessionVar(), handleCompoundCondition(), irods::network_manager::init_from_type(), irods::auth_manager::init_from_type(), initDataOprInp(), instantiate(), isIterable(), isIterableBaseRuleType(), msiGetIcatTime(), msiSetQuota(), narrow(), newConstructorFD(), newConstructorFD2(), newDeconstructorFD(), newExprType(), newExternalFD(), newFunctionFD(), newNode(), newRuleIndexListFD(), newSimpType(), newTypingConstraint(), irods.six.Iterator::next(), obfSetDefaultHashType(), occursIn(), occursInEquiv(), parseAndComputeRule(), irods.pypyodbc.Cursor::prepare(), irods.pypyodbc.Cursor::primaryKeys(), printType(), irods.pypyodbc.Cursor::procedurecolumns(), irods.pypyodbc.Cursor::procedures(), processCoercion(), replaceDynamicWithNewTVar(), replInOutStruct(), resolveSpecCollType(), irods::resource_to_kvp(), irods::serialize_resource_plugin_to_json(), setVariableValue(), splitVarL(), splitVarR(), irods.pypyodbc.Cursor::statistics(), irods.pypyodbc.Cursor::tables(), tautologyLt(), trimMsParamArray(), typeToString(), typeToStringParser(), unifyNonTvars(), unifyTVarL(), unifyTVarR(), and unifyWith().