is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.
| setting.py (pymol-v2.1.0.tar.bz2) | : | setting.py (pymol-open-source-2.2.0) |
|---|
| | |
| skipping to change at line 628 | | skipping to change at line 628 |
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| traceback.print_exc() | | traceback.print_exc() |
| print("Error: unable to get_bond info.") | | print("Error: unable to get_bond info.") |
| raise QuietException | | raise QuietException |
| finally: | | finally: |
| _self.unlock(r,_self) | | _self.unlock(r,_self) |
| if _self._raising(r,_self): raise QuietException | | if _self._raising(r,_self): raise QuietException |
| if not quiet: | | if not quiet: |
| name = name_dict.get(index, name) | | name = name_dict.get(index, name) |
| suffix = ' state %d' % state if state > 0 else '' | | suffix = ' state %d' % state if state > 0 else '' |
| for model, vlist in r: | | for model, vlist in r: |
|
| print(' %s = %s for object %s' % (name, cmd.get(name, model), mo
del)) | | print(' %s = %s for object %s' % (name, _self.get(name, model),
model)) |
| for idx1, idx2, value in vlist: | | for idx1, idx2, value in vlist: |
| if value is None: | | if value is None: |
| continue | | continue |
| print(' %s = %s between (%s`%d)-(%s`%d%s)' % (name, | | print(' %s = %s between (%s`%d)-(%s`%d%s)' % (name, |
| value, model, idx1, model, idx2, suffix)) | | value, model, idx1, model, idx2, suffix)) |
| return r | | return r |
| | |
| def unset_deep(settings='', object='*', updates=1, quiet=1, _self=cmd): | | def unset_deep(settings='', object='*', updates=1, quiet=1, _self=cmd): |
| ''' | | ''' |
| DESCRIPTION | | DESCRIPTION |
| | |
| skipping to change at line 676 | | skipping to change at line 676 |
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| else: | | else: |
| selection = None | | selection = None |
| try: | | try: |
| if _self.get_type(object) in ( | | if _self.get_type(object) in ( |
| 'object:group', 'object:molecule'): | | 'object:group', 'object:molecule'): |
| selection = '(' + object + ')' | | selection = '(' + object + ')' |
| except: | | except: |
| pass | | pass |
| | |
| # 0 (object-level) and 1-N (object-state-level) | | # 0 (object-level) and 1-N (object-state-level) |
|
| states = range(cmd.count_states(object) + 1) | | states = range(_self.count_states(object) + 1) |
| | |
| for setting in settings: | | for setting in settings: |
| try: | | try: |
| for state in states: | | for state in states: |
| unset(setting, object, state=state, **kwargs) | | unset(setting, object, state=state, **kwargs) |
| if selection: | | if selection: |
| unset(setting, selection, **kwargs) | | unset(setting, selection, **kwargs) |
| except: | | except: |
| if not quiet: | | if not quiet: |
| print(' Setting: %s unset failed' % setting) | | print(' Setting: %s unset failed' % setting) |
| | | |
| End of changes. 2 change blocks. |
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| 2 lines changed or deleted | | 2 lines changed or added |
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"Fossies" - the Fresh Open Source Software Archive 