is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.
| INSTALL (pymol-v2.1.0.tar.bz2) | : | INSTALL (pymol-open-source-2.2.0) |
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| INSTALLATION VIA COMPILATION | | INSTALLATION VIA COMPILATION |
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| There is currently only one officially-supported approach for building | | See also: http://pymolwiki.org/index.php/Linux_Install |
| and installing PyMOL from the open-source code: | | |
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| Using Python Disutils under an open-source environment, such as: | | |
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| Linux | | |
| FreeBSD | | |
| Mac OS X under X11 (with Fink or similar) | | |
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| See also: http://pymolwiki.org/index.php/Linux_Install | | |
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| REQUIREMENTS | | REQUIREMENTS |
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| - C++11 compiler (e.g. gcc 4.4+) | | - C++11 compiler (e.g. gcc 4.7+) |
| - Python 2.6+ | | - Python 2.7+ |
| - Tcl/Tk (via tkinter) | | - Pmw (Python Megawidgets) (optional, for legacy GUI/plugins) |
| - Pmw (Python Megawidgets) | | |
| - OpenGL | | - OpenGL |
| - GLEW | | - GLEW |
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| - GLUT (freeglut) | | - GLUT (freeglut) (optional, disable with --no-glut) |
| - libpng | | - libpng |
| - freetype | | - freetype |
| - libxml2 (optional, for COLLADA export, disable with --no-libxml) | | - libxml2 (optional, for COLLADA export, disable with --no-libxml) |
| - msgpack-c 1.0+ (optional, for fast MMTF loading, disable with | | - msgpack-c 1.0+ (optional, for fast MMTF loading, disable with |
| --use-msgpackc=no) | | --use-msgpackc=no) |
| - PyQt5, PyQt4, or PySide (optional, will fall back to Tk interface) | | - PyQt5, PyQt4, or PySide (optional, will fall back to Tk interface) |
| - simplemmtf (optional, for MMTF export) | | - simplemmtf (optional, for MMTF export) |
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| | - glm |
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| SETUP OPTIONS | | SETUP OPTIONS |
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| python setup.py --help | | python setup.py --help |
| python setup.py --help-distutils | | python setup.py --help-distutils |
| python setup.py --help-distutils install | | python setup.py --help-distutils install |
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| Special install options: | | Special install options: |
| --pymol-path= installation directory for PyMOL data ($PYMOL_PATH) | | --pymol-path= installation directory for PyMOL data ($PYMOL_PATH) |
| --bundled-pmw install bundled Pmw module | | --bundled-pmw install bundled Pmw module |
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| skipping to change at line 59 | | skipping to change at line 50 |
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| CC C compiler command | | CC C compiler command |
| CXXFLAGS C++ compiler flags | | CXXFLAGS C++ compiler flags |
| CFLAGS C compiler and linker flags | | CFLAGS C compiler and linker flags |
| CPPFLAGS C/C++ preprocessor flags, e.g. -I/tmp/msgpack-c/include | | CPPFLAGS C/C++ preprocessor flags, e.g. -I/tmp/msgpack-c/include |
| LDFLAGS linker flags | | LDFLAGS linker flags |
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| INSTALLATION | | INSTALLATION |
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| python setup.py install --prefix=~/someplace | | python setup.py install --prefix=~/someplace |
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| Note: under Fink, "python" above must be Fink's python. | | |
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| RUNNING PyMOL | | RUNNING PyMOL |
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| ~/someplace/bin/pymol | | ~/someplace/bin/pymol |
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| Good luck! | | Good luck! |
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| End of changes. 5 change blocks. |
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| 17 lines changed or deleted | | 6 lines changed or added |
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"Fossies" - the Fresh Open Source Software Archive 