is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.
| ChangeLog (pymol-v2.1.0.tar.bz2) | : | ChangeLog (pymol-open-source-2.2.0) |
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| ========================================================================= | | ========================================================================= |
| CHANGE LOG | | CHANGE LOG |
| ========================================================================= | | ========================================================================= |
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|
| | 2018-07-24 Thomas Holder, Jarrett Johnson |
| | |
| | * 2.2.0 |
| | |
| | * Wizard > Mutagenesis > Nucleic Acids |
| | |
| | * load format "pqr": retain_order=1 |
| | |
| | 2018-07-03 Thomas Holder, Blaine Bell, Gabriel Marques |
| | |
| | * Graphics refactoring, ported from Incentive PyMOL |
| | |
| | Ported features: |
| | - label improvements (multiline, connectors, background color) |
| | - transparency_mode 3: Order-independent transparency |
| | - bg_image_filename: Background image support |
| | |
| | * new dependency (header-only): glm |
| | |
| | 2018-06-08 Thomas Holder <thomas.holder@schrodinger.com> |
| | |
| | * fix selection wildcard (sf.net/p/pymol/bugs/209) |
| | |
| | * fix PDB atom id > 99999 crash |
| | |
| | * more robust PQR parsing |
| | |
| | * pymol2.PyMOL() context manager |
| | |
| | * new setting: cif_metalc_as_zero_order_bonds |
| | |
| | * new setting: sdf_write_zero_order_bonds |
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| | * cif: accept _chem_comp_bond.type alias for _chem_comp_bond.value_order |
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| | 2018-05-03 Thomas Holder <thomas.holder@schrodinger.com> |
| | |
| | * fix anaglyph stereo in batch (headless) mode |
| | |
| | * fix possible memory corruption with boolean settings |
| | |
| | * measurement wizard: distances between states (all_states=on) |
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| | * get_fastastr: nucleic acid, by chain |
| | |
| | * menu: A (Action) > group |
| | |
| | * sequence viewer menu: ss (Secondary Structure) |
| | |
| | * MAE export of groups (s_m_subgroupid) |
| | |
| | * macOS: -O3 -fno-strict-aliasing (bugs/205) |
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| | 2018-04-10 Thomas Holder <thomas.holder@schrodinger.com> |
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| | * sf.net/p/pymol/bugs/199 bash -> sh |
| | |
| | * ignore zero-order bonds in neighbor lookup, this could cause |
| | wrong bond order guessing in distance based bonding |
| | |
| | * fix crash loading reduced 5ijo.mmtf |
| | |
| | * volume panel: fix zoom (CTRL+R-Drag) and value input (R-Click) |
| | |
| | * QOpenGLWidget support (not active by default) |
| | |
| | * --gldebug -> backtrace on GL error |
| | |
| | * 2.2.0a0 (unstable/experimental) |
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| 2018-03-13 Thomas Holder <thomas.holder@schrodinger.com> | | 2018-03-13 Thomas Holder <thomas.holder@schrodinger.com> |
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| * 2.1.0 | | * 2.1.0 |
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| * PyQt interface | | * PyQt interface |
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| 2018-02-28 Thomas Holder <thomas.holder@schrodinger.com> | | 2018-02-28 Thomas Holder <thomas.holder@schrodinger.com> |
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| * stick_round_nub for COLLADA export | | * stick_round_nub for COLLADA export |
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| End of changes. 1 change blocks. |
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| 0 lines changed or deleted | | 70 lines changed or added |
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