"Fossies" - the Fresh Open Source Software Archive  

Source code changes report for "PyMOL" between the packages
pymol-v2.1.0.tar.bz2 and pymol-open-source-2.2.0.tar.gz

About: PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.

[ Fossies home | Fossies main Diffs page | PyMOL Diffs folder ]

Summary:

The "PyMOL" source code changed by about 3.3% and now consists of 1269 regular files (+16) and 108 directories.

Related Informations:

See ChangeLog (pymol -open-source2.2.0).

Changes In Files (According File Type):

File TypeTotalAddedRemovedChanged
Header file 237 9 0 48
C program 87 16 10 22
C++ program 183 9 0 69
Patch 1 0 0 0
Python program 310 2 0 37
Shell program 8 0 6 0
Automake file 4 0 4 0
JavaScript file 18 0 0 0
Makefile 4 0 3 0
Git file 1 1 0 0
HTML page 26 0 0 0
Log file 69 0 0 0
Parameter file 1 0 0 0
Qt UI file 15 0 0 0
TeX document 1 0 0 0
Data file 132 5 0 0
Image file 18 0 0 0
Vector Image file 2 0 0 0
X Pixmap file 10 0 0 0
Directory 109 1 1 0
Archive 9 0 0 0
Change log 2 0 1 1
Information file 5 0 1 2
License 5 0 1 0
Readme file 8 1 0 2
Text file 139 1 1 0
Other 2 0 1 0
Total Files14064529181


Header Files (57 of 237):

NameStatusDeltaVisual Diff
layer0/Base.h changed 16.5% diff
layer0/GenericBuffer.h added
layer0/GraphicsUtil.h added
layer0/Matrix.h changed 1.0% diff
layer0/os_gl.h changed 14.4% diff
layer0/os_predef.h changed 2.7% diff
layer0/PyMOLGlobals.h changed 1.5% diff
layer0/PyMOLOptions.h changed 2.3% diff
layer0/ShaderMgr.h changed 100.0% diff
layer0/Sphere.h changed 10.3% diff
layer0/Texture.h changed 4.6% diff
layer0/Triangle.h changed 7.1% diff
layer0/Util.h changed 8.3% diff
layer0/Util2.h changed 27.3% diff
layer0/Vector.h changed 2.8% diff
layer0/Version.h changed 13.0% diff
layer1/Basis.h changed 13.7% diff
layer1/CGO.h changed 100.0% diff
layer1/Character.h changed 3.7% diff
layer1/Color.h changed 19.5% diff
layer1/Extrude.h changed 17.4% diff
layer1/Font.h changed 14.8% diff
layer1/FontTTF.h changed skipped
layer1/Ortho.h changed 3.2% diff
layer1/P.h changed 1.2% diff
layer1/PyMOLObject.h changed 0.9% diff
layer1/Ray.h changed 8.4% diff
layer1/Scene.h changed 29.9% diff
layer1/SceneDef.h added
layer1/ScenePicking.h added
layer1/SceneRay.h added
layer1/SceneRender.h added
layer1/ScrollBar.h changed 6.6% diff
layer1/Setting.h changed 6.4% diff
layer1/SettingInfo.h changed 2.1% diff
layer1/Text.h changed 45.2% diff
layer1/TypeFace.h changed 3.7% diff
layer1/Wizard.h changed 7.4% diff
layer2/CoordSet.h changed 27.0% diff
layer2/GadgetSet.h changed 2.0% diff
layer2/ObjectAlignment.h changed 5.2% diff
layer2/ObjectCGO.h changed 6.2% diff
layer2/ObjectDist.h changed 11.0% diff
layer2/ObjectMap.h changed 0.2% diff
layer2/ObjectMolecule.h changed 1.2% diff
layer2/ObjectSlice.h changed 1.0% diff
layer2/ObjectSurface.h changed 6.4% diff
layer2/ObjectVolume.h changed 0.8% diff
layer2/RepLabel.h changed 14.6% diff
layer2/RepSphere.h changed 24.9% diff
layer2/RepSphereGenerate.h added
layer2/RepSphereImmediate.h added
layer3/AtomIterators.h changed 4.2% diff
layer3/Editor.h changed 1.4% diff
layer3/Executive.h changed 1.3% diff
layer3/MaeExportHelpers.h added
layer3/Selector.h changed 2.0% diff
layer4/PopUp.h changed 5.9% diff

C Programs (48 of 87):

NameStatusDeltaVisual Diff
contrib/champ/champ.c changed 0.3% diff
data/shaders/anaglyph.fs removed
data/shaders/anaglyph_header.fs changed 100.0% diff
data/shaders/bg.fs changed 99.1% diff
data/shaders/bg.vs changed 75.1% diff
data/shaders/compute_color_for_light.fs changed 100.0% diff
data/shaders/compute_fog_color.fs changed 100.0% diff
data/shaders/connector.fs added
data/shaders/connector.gs added
data/shaders/connector.shared added
data/shaders/connector.vs added
data/shaders/copy.fs added
data/shaders/copy.vs added
data/shaders/cylinder.fs changed 85.5% diff
data/shaders/cylinder.vs changed 61.4% diff
data/shaders/default.fs changed 96.9% diff
data/shaders/default.vs changed 100.0% diff
data/shaders/default_es.fs removed
data/shaders/default_es.vs removed
data/shaders/default_es2.fs removed
data/shaders/default_es2.vs removed
data/shaders/defaultscreen.fs removed
data/shaders/defaultscreen.vs removed
data/shaders/indicator.fs changed 100.0% diff
data/shaders/indicator.vs changed 43.2% diff
data/shaders/label.fs changed 76.7% diff
data/shaders/label.vs changed 100.0% diff
data/shaders/labelscreen.fs removed
data/shaders/labelscreen.vs removed
data/shaders/line.fs added
data/shaders/line.vs added
data/shaders/oit.fs added
data/shaders/oit.vs added
data/shaders/ramp.fs changed 74.2% diff
data/shaders/ramp.vs changed 26.3% diff
data/shaders/screen.fs changed 58.9% diff
data/shaders/screen.vs changed 10.7% diff
data/shaders/sphere.fs changed 71.2% diff
data/shaders/sphere.vs changed 68.6% diff
data/shaders/spheredirect.vs removed
data/shaders/surface.fs added
data/shaders/surface.vs added
data/shaders/trilines.fs added
data/shaders/trilines.vs added
data/shaders/volume.fs changed 61.5% diff
data/shaders/volume.vs changed 54.2% diff
data/shaders/webgl_header.fs added
data/shaders/webgl_header.vs added

C++ Programs (78 of 183):

NameStatusDeltaVisual Diff
layer0/GenericBuffer.cpp added
layer0/GraphicsUtil.cpp added
layer0/Matrix.cpp changed 5.1% diff
layer0/ShaderMgr.cpp changed 94.4% diff
layer0/ShaderPrg.cpp added
layer0/Sphere.cpp changed 3.3% diff
layer0/Texture.cpp changed 28.0% diff
layer0/Triangle.cpp changed 0.3% diff
layer0/Util.cpp changed 9.6% diff
layer0/Util2.cpp changed 32.3% diff
layer0/Vector.cpp changed 2.3% diff
layer0/Word.cpp changed 0.9% diff
layer1/CGO.cpp changed 97.8% diff
layer1/Character.cpp changed 25.9% diff
layer1/COLLADA.cpp changed 0.1% diff
layer1/Color.cpp changed 2.5% diff
layer1/Extrude.cpp changed 5.4% diff
layer1/FontGLUT.cpp changed 2.3% diff
layer1/FontType.cpp changed 64.7% diff
layer1/Ortho.cpp changed 9.3% diff
layer1/P.cpp changed 4.2% diff
layer1/PyMOLObject.cpp changed 1.8% diff
layer1/Ray.cpp changed 6.9% diff
layer1/Scene.cpp changed 37.8% diff
layer1/ScenePicking.cpp added
layer1/SceneRay.cpp added
layer1/SceneRender.cpp added
layer1/ScrollBar.cpp changed 3.2% diff
layer1/Seq.cpp changed 1.2% diff
layer1/Setting.cpp changed 10.2% diff
layer1/Text.cpp changed 33.3% diff
layer1/TypeFace.cpp changed 3.4% diff
layer1/Wizard.cpp changed 2.4% diff
layer2/AtomInfo.cpp changed 0.2% diff
layer2/CifMoleculeReader.cpp changed 1.2% diff
layer2/CoordSet.cpp changed 26.9% diff
layer2/DistSet.cpp changed 4.1% diff
layer2/GadgetSet.cpp changed 19.6% diff
layer2/MmtfMoleculeReader.cpp changed 4.0% diff
layer2/ObjectAlignment.cpp changed 9.3% diff
layer2/ObjectCallback.cpp changed 0.5% diff
layer2/ObjectCGO.cpp changed 58.1% diff
layer2/ObjectDist.cpp changed 7.4% diff
layer2/ObjectGadget.cpp changed 1.1% diff
layer2/ObjectGadgetRamp.cpp changed 2.0% diff
layer2/ObjectMap.cpp changed 1.6% diff
layer2/ObjectMesh.cpp changed 4.7% diff
layer2/ObjectMolecule.cpp changed 0.3% diff
layer2/ObjectMolecule2.cpp changed 2.3% diff
layer2/ObjectSlice.cpp changed 5.4% diff
layer2/ObjectSurface.cpp changed 39.2% diff
layer2/ObjectVolume.cpp changed 12.2% diff
layer2/RepAngle.cpp changed 52.4% diff
layer2/RepCartoon.cpp changed 10.0% diff
layer2/RepCylBond.cpp changed 78.0% diff
layer2/RepDihedral.cpp changed 39.1% diff
layer2/RepDistDash.cpp changed 50.3% diff
layer2/RepDistLabel.cpp changed 20.1% diff
layer2/RepDot.cpp changed 21.5% diff
layer2/RepEllipsoid.cpp changed 4.2% diff
layer2/RepLabel.cpp changed 100.0% diff
layer2/RepMesh.cpp changed 17.7% diff
layer2/RepNonbonded.cpp changed 77.6% diff
layer2/RepNonbondedSphere.cpp changed 79.6% diff
layer2/RepRibbon.cpp changed 45.8% diff
layer2/RepSphere.cpp changed 86.4% diff
layer2/RepSphereGenerate.cpp added
layer2/RepSphereImmediate.cpp added
layer2/RepSurface.cpp changed 53.7% diff
layer2/RepWireBond.cpp changed 68.4% diff
layer3/Editor.cpp changed 1.1% diff
layer3/Executive.cpp changed 1.2% diff
layer3/MaeExportHelpers.cpp added
layer3/MoleculeExporter.cpp changed 4.8% diff
layer3/Selector.cpp changed 2.0% diff
layer4/Cmd.cpp changed 0.7% diff
layer4/PopUp.cpp changed 3.7% diff
layer5/PyMOL.cpp changed 1.5% diff

Python Programs (39 of 310):

NameStatusDeltaVisual Diff
create_shadertext.py changed 58.6% diff
examples/devel/xmlrpc02.py changed 2.9% diff
modules/pmg_qt/builder.py changed 0.1% diff
modules/pmg_qt/file_dialogs.py changed 0.2% diff
modules/pmg_qt/mimic_tk.py changed 1.6% diff
modules/pmg_qt/properties_dialog.py changed 8.9% diff
modules/pmg_qt/pymol_gl_widget.py changed 22.3% diff
modules/pmg_qt/pymol_qt_gui.py changed 0.3% diff
modules/pmg_qt/volume.py changed 4.0% diff
modules/pymol/_gui.py changed 1.0% diff
modules/pymol/api.py changed 0.6% diff
modules/pymol/cgo.py changed 0.6% diff
modules/pymol/completing.py changed 0.9% diff
modules/pymol/controlling.py changed 0.3% diff
modules/pymol/editing.py changed 0.9% diff
modules/pymol/editor.py changed 0.4% diff
modules/pymol/exporting.py changed 6.6% diff
modules/pymol/externing.py changed 2.0% diff
modules/pymol/fitting.py changed 1.1% diff
modules/pymol/gui.py changed 21.9% diff
modules/pymol/invocation.py changed 3.3% diff
modules/pymol/keywords.py changed 0.3% diff
modules/pymol/menu.py changed 1.6% diff
modules/pymol/moving.py changed 0.2% diff
modules/pymol/Qt/__init__.py changed 13.4% diff
modules/pymol/querying.py changed 1.7% diff
modules/pymol/rpc.py changed 0.7% diff
modules/pymol/selecting.py changed 1.7% diff
modules/pymol/setting.py changed 0.7% diff
modules/pymol/stereochemistry/__init__.py added
modules/pymol/util.py changed 0.2% diff
modules/pymol/viewing.py changed 0.1% diff
modules/pymol/wizard/filter.py changed 2.9% diff
modules/pymol/wizard/measurement.py changed 5.6% diff
modules/pymol/wizard/nucmutagenesis.py added
modules/pymol/xray.py changed 0.1% diff
modules/pymol2/__init__.py changed 3.2% diff
monkeypatch_distutils.py changed 2.9% diff
setup.py changed 2.2% diff

Shell Programs (6 of 8):

NameStatusDeltaVisual Diff
setup/pymol.com.basic removed
setup/pymol.com.template removed
setup/pymol.csh.template removed
setup/setup.sh.macosx-x11 removed
setup/setup.sh.unix-helper removed
setup/setup.sh.unix-mindep removed

Automake Files (all 4):

NameStatusDeltaVisual Diff
contrib/champ/Makefile.am removed
contrib/champ/Makefile.in removed
ov/src/Makefile.am removed
ov/src/Makefile.in removed

Makefiles (3 of 4):

NameStatusDeltaVisual Diff
contrib/champ/Makefile.delsci removed
contrib/Makefile.delsci removed
ov/src/Makefile.delsci removed

Git Files (all 1):

NameStatusDeltaVisual Diff
.gitattributes added

Data Files (5 of 132):

NameStatusDeltaVisual Diff
data/chempy/fragments/atp.pkl added
data/chempy/fragments/ctp.pkl added
data/chempy/fragments/gtp.pkl added
data/chempy/fragments/ttp.pkl added
data/chempy/fragments/utp.pkl added

Directories (2 of 109):

NameStatus
modules/pymol/stereochemistry added
products removed

Change Logs (all 2):

NameStatusDeltaVisual Diff
ChangeLog changed 0.7% diff
NEWS removed

Information Files (3 of 5):

NameStatusDeltaVisual Diff
AUTHORS changed 7.1% diff
INSTALL changed 27.8% diff
setup/INSTALL.unix-mindep removed

Licenses (1 of 5):

NameStatusDeltaVisual Diff
COPYING removed

Readme Files (3 of 8):

NameStatusDeltaVisual Diff
contrib/README changed 97.5% diff
README.md added
test/README changed 97.4% diff

Text Files (2 of 139):

NameStatusDeltaVisual Diff
.svnignore added
data/shaders/shadertext.txt removed

Other Files (1 of 2):

NameStatusDeltaVisual Diff
products/.preserve removed

Packages Compared:

pymol-v2.1.0.tar.bz2
pymol-open-source-2.2.0.tar.gz

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