is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.
| command.py (pymol-v1.8.6.0.tar.bz2) | : | command.py (pymol-v2.1.0.tar.bz2) |
|---|
| | |
| skipping to change at line 15 | | skipping to change at line 15 |
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| except ImportError: | | except ImportError: |
| from itertools import zip_longest as izip_longest | | from itertools import zip_longest as izip_longest |
| | |
| from pymol import cmd, stored, wizard | | from pymol import cmd, stored, wizard |
| | |
| class Command(wizard.Wizard): | | class Command(wizard.Wizard): |
| ''' | | ''' |
| Generic wizard for any PyMOL command. | | Generic wizard for any PyMOL command. |
| ''' | | ''' |
| | |
|
| async = 1 | | async_ = 1 |
| ignored_args = ('quiet',) | | ignored_args = ('quiet',) |
| | |
| def __init__(self, command, _self=cmd): | | def __init__(self, command, _self=cmd): |
| import inspect | | import inspect |
| | |
| self.input_arg = None | | self.input_arg = None |
| self.input_value = None | | self.input_value = None |
| self.input_numeric = False | | self.input_numeric = False |
| | |
| wizard.Wizard.__init__(self, _self) | | wizard.Wizard.__init__(self, _self) |
| | |
| skipping to change at line 77 | | skipping to change at line 77 |
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| self.set_menu_values(arg, sc.keywords[:20]) | | self.set_menu_values(arg, sc.keywords[:20]) |
| except KeyError: | | except KeyError: |
| pass | | pass |
| return self.menu[arg] | | return self.menu[arg] |
| | |
| def set_current(self, k, v): | | def set_current(self, k, v): |
| self.current[k] = v | | self.current[k] = v |
| self.cmd.refresh_wizard() | | self.cmd.refresh_wizard() |
| | |
| def run(self): | | def run(self): |
|
| if self.async: | | if self.async_: |
| self.cmd.async(self.func, **self.current) | | self.cmd.async_(self.func, **self.current) |
| else: | | else: |
| self.func(**self.current) | | self.func(**self.current) |
| | |
| def cleanup(self): | | def cleanup(self): |
| delattr(stored, self.stored_name) | | delattr(stored, self.stored_name) |
| | |
| def get_panel(self): | | def get_panel(self): |
| if self.input_arg: | | if self.input_arg: |
| return [ | | return [ |
| [1, 'Input', ''], | | [1, 'Input', ''], |
| | | |
| End of changes. 2 change blocks. |
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| 3 lines changed or deleted | | 3 lines changed or added |
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"Fossies" - the Fresh Open Source Software Archive 