"Fossies" - the Fresh Open Source Software Archive  

Source code changes of the file "examples/devel/start_pymol.py" between
pymol-v1.8.6.0.tar.bz2 and pymol-v2.1.0.tar.bz2

About: PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.

start_pymol.py  (pymol-v1.8.6.0.tar.bz2)	:	start_pymol.py  (pymol-v2.1.0.tar.bz2)
skipping to change at line 29		skipping to change at line 29
# (2) include the following code block at the *top* level of your		# (2) include the following code block at the *top* level of your
# program script.		# program script.
#		#
# ================================================================		# ================================================================
# PyMOL launch code		# PyMOL launch code
#		#
# === Provide arguments to PyMOL (first one must be "pymol")		# === Provide arguments to PyMOL (first one must be "pymol")
pymol_argv = [ "pymol", "-q" ]		pymol_argv = [ "pymol", "-q" ]
#		#
# === Launch the PyMOL thread(s)		# === Launch the PyMOL thread(s)
import os,threading,__main__,__builtin__		try:
		import __builtin__
		except ImportError:
		import builtins as __builtin__
		import os,threading,__main__
threading.Thread(target=__builtin__.execfile,		threading.Thread(target=__builtin__.execfile,
args=(os.environ['PYMOL_PATH']+"/modules/launch_pymol.py",		args=(os.environ['PYMOL_PATH']+"/modules/launch_pymol.py",
__main__.__dict__,__main__.__dict__)).start()		__main__.__dict__,__main__.__dict__)).start()
#		#
# === Wait until PyMOL is ready to receive commands		# === Wait until PyMOL is ready to receive commands
e=threading.Event()		e=threading.Event()
while not hasattr(__main__,'pymol'):		while not hasattr(__main__,'pymol'):
e.wait(0.01)		e.wait(0.01)
while not pymol._cmd.ready():		while not pymol._cmd.ready():
e.wait(0.01)		e.wait(0.01)
#		#
# PyMOL is now launched, you can now import "pymol" modules.		# PyMOL is now launched, you can now import "pymol" modules.
# ===============================================================		# ===============================================================
from pymol import cmd		from pymol import cmd
cmd.load("$PYMOL_PATH/test/dat/pept.pdb")		cmd.load("$PYMOL_PATH/test/dat/pept.pdb")
print " The surface area is: %8.3f"%cmd.get_area()		print(" The surface area is: %8.3f"%cmd.get_area())
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