"Fossies" - the Fresh Open Source Software Archive  

Source code changes report for "PyMOL" between the packages
pymol-v1.8.6.0.tar.bz2 and pymol-v2.1.0.tar.bz2

About: PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.

[ Fossies home | Fossies main Diffs page | PyMOL Diffs folder ]

Summary:

The "PyMOL" source code changed by about 2.1% and now consists of 1253 regular files (+22) and 108 directories (+7).

Related Informations:

See ChangeLog (pymol v2.1.0).

Changes In Files (According File Type):

File TypeTotalAddedRemovedChanged
Header file 229 3 1 41
C program 71 0 0 5
C++ program 174 1 0 69
Spec file 12 0 12 0
Patch 1 0 0 0
Python program 311 27 3 81
Shell program 10 0 2 0
Automake file 4 0 0 0
JavaScript file 18 0 0 0
Makefile 14 0 10 0
HTML page 26 0 0 1
Log file 69 0 0 0
Parameter file 1 0 0 0
Qt UI file 15 15 0 0
TeX document 1 1 0 0
Data file 120 0 0 0
Image file 18 0 0 1
Vector Image file 2 2 0 0
X Pixmap file 10 0 0 0
Directory 111 10 3 0
Archive 9 0 0 0
Change log 2 0 0 1
Information file 5 0 0 1
License 5 0 0 0
Readme file 7 1 0 0
Text file 145 0 0 0
Other 2 0 0 0
Total Files13926031200


Header Files (45 of 229):

NameStatusDeltaVisual Diff
contrib/champ/os_python.h changed 10.3% diff
contrib/mmtf-c/mmtf_parser.h changed 1.3% diff
contrib/mmtf-c/mmtf_parser_private.h changed 2.7% diff
layer0/Base.h changed 7.2% diff
layer0/Crystal.h changed 1.7% diff
layer0/Feedback.h changed 1.0% diff
layer0/File.h changed 71.8% diff
layer0/MyPNG.h changed 12.0% diff
layer0/os_gl.h changed 1.4% diff
layer0/os_predef.h changed 1.9% diff
layer0/os_python.h changed 9.2% diff
layer0/PyMOLGlobals.h changed 3.7% diff
layer0/PyMOLOptions.h changed 4.5% diff
layer0/ShaderMgr.h changed 0.3% diff
layer0/strcasecmp.h added
layer0/Util.h changed 1.5% diff
layer0/Vector.h changed 0.6% diff
layer0/Version.h changed 64.2% diff
layer1/CGO.h changed 13.5% diff
layer1/CGOStruct.h removed
layer1/Ortho.h changed 2.8% diff
layer1/P.h changed 2.0% diff
layer1/PConv.h changed 1.0% diff
layer1/PyMOLObject.h changed 0.9% diff
layer1/Rep.h changed 2.6% diff
layer1/Scene.h changed 0.7% diff
layer1/SettingInfo.h changed 1.3% diff
layer1/View.h changed 3.3% diff
layer2/AtomInfo.h changed 6.7% diff
layer2/CifFile.h changed 15.6% diff
layer2/DistSet.h changed 1.1% diff
layer2/GadgetSet.h changed 1.3% diff
layer2/HydrogenAdder.h added
layer2/ObjectGadget.h changed 1.0% diff
layer2/ObjectGadgetRamp.h changed 0.6% diff
layer2/ObjectMap.h changed 0.3% diff
layer2/ObjectMolecule.h changed 0.9% diff
layer2/VFont.h changed 6.9% diff
layer3/Editor.h changed 6.3% diff
layer3/Executive.h changed 3.0% diff
layer3/MoleculeExporter.h changed 29.4% diff
layer3/SpecRec.h added
layer4/Menu.h changed 6.6% diff
layer5/main.h changed 13.2% diff
layer5/PyMOL.h changed 22.5% diff

C Programs (5 of 71):

NameStatusDeltaVisual Diff
contrib/champ/champ_module.c changed 1.0% diff
contrib/champ/os_memory.c changed 0.5% diff
contrib/champ/vla.c changed 1.7% diff
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c changed 0.5% diff
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c changed 0.5% diff

C++ Programs (70 of 174):

NameStatusDeltaVisual Diff
contrib/mmtf-c/mmtf_parser.cpp changed 1.2% diff
contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp changed 0.7% diff
layer0/Crystal.cpp changed 1.5% diff
layer0/Err.cpp changed 9.9% diff
layer0/Feedback.cpp changed 9.8% diff
layer0/File.cpp changed 50.2% diff
layer0/Map.cpp changed 1.8% diff
layer0/Matrix.cpp changed 0.1% diff
layer0/MyPNG.cpp changed 32.5% diff
layer0/os_gl.cpp changed 0.2% diff
layer0/Util.cpp changed 2.8% diff
layer0/Vector.cpp changed 1.2% diff
layer1/ButMode.cpp changed 11.0% diff
layer1/CGO.cpp changed 0.6% diff
layer1/COLLADA.cpp changed 8.9% diff
layer1/Control.cpp changed 2.7% diff
layer1/FontGLUT.cpp changed 16.3% diff
layer1/FontType.cpp changed 0.9% diff
layer1/Movie.cpp changed 2.0% diff
layer1/Ortho.cpp changed 2.0% diff
layer1/P.cpp changed 3.2% diff
layer1/PConv.cpp changed 1.4% diff
layer1/PyMOLObject.cpp changed 2.2% diff
layer1/Scene.cpp changed 1.1% diff
layer1/ScrollBar.cpp changed 0.2% diff
layer1/Seq.cpp changed 11.2% diff
layer1/Setting.cpp changed 1.0% diff
layer1/View.cpp changed 1.9% diff
layer1/Wizard.cpp changed 2.6% diff
layer2/AtomInfo.cpp changed 10.8% diff
layer2/CifFile.cpp changed 18.6% diff
layer2/CifMoleculeReader.cpp changed 4.5% diff
layer2/CoordSet.cpp changed 9.3% diff
layer2/DistSet.cpp changed 6.0% diff
layer2/GadgetSet.cpp changed 1.3% diff
layer2/HydrogenAdder.cpp added
layer2/MmtfMoleculeReader.cpp changed 9.9% diff
layer2/MolV3000.cpp changed 2.1% diff
layer2/ObjectAlignment.cpp changed 0.5% diff
layer2/ObjectCGO.cpp changed 1.4% diff
layer2/ObjectDist.cpp changed 0.6% diff
layer2/ObjectGadgetRamp.cpp changed 0.8% diff
layer2/ObjectGroup.cpp changed 3.1% diff
layer2/ObjectMap.cpp changed 1.0% diff
layer2/ObjectMesh.cpp changed 1.3% diff
layer2/ObjectMolecule.cpp changed 0.8% diff
layer2/ObjectMolecule2.cpp changed 3.9% diff
layer2/ObjectSlice.cpp changed 1.8% diff
layer2/ObjectSurface.cpp changed 0.1% diff
layer2/RepAngle.cpp changed 5.4% diff
layer2/RepCylBond.cpp changed 0.1% diff
layer2/RepDihedral.cpp changed 4.8% diff
layer2/RepDistDash.cpp changed 5.0% diff
layer2/RepDistLabel.cpp changed 8.9% diff
layer2/RepSurface.cpp changed 0.04% diff
layer2/Sculpt.cpp changed 0.2% diff
layer2/VFont.cpp changed 2.1% diff
layer3/AtomIterators.cpp changed 0.4% diff
layer3/CifDataValueFormatter.cpp changed 6.2% diff
layer3/Editor.cpp changed 0.5% diff
layer3/Executive.cpp changed 1.5% diff
layer3/MoleculeExporter.cpp changed 10.4% diff
layer3/MovieScene.cpp changed 5.0% diff
layer3/Seeker.cpp changed 3.5% diff
layer3/Selector.cpp changed 0.8% diff
layer4/Cmd.cpp changed 1.8% diff
layer4/Menu.cpp changed 11.5% diff
layer4/PopUp.cpp changed 1.3% diff
layer5/main.cpp changed 3.3% diff
layer5/PyMOL.cpp changed 9.1% diff

Spec Files (all 12):

NameStatusDeltaVisual Diff
examples/package/redhat/pymol-0.93-1.rh62.py152.spec removed
examples/package/redhat/pymol-0.93-1.rh70.py152.spec removed
examples/package/redhat/pymol-0.93-1.rh72.py21.spec removed
examples/package/redhat/pymol-0.93-1.rh73.py22.spec removed
examples/package/redhat/pymol-0.93-1.rh80.py22.spec removed
examples/package/redhat/pymol-0.93-1.rh90.py22.spec removed
examples/package/redhat/pymol-0.96-1.rh62.py152.spec removed
examples/package/redhat/pymol-0.96-1.rh70.py152.spec removed
examples/package/redhat/pymol-0.96-1.rh72.py21.spec removed
examples/package/redhat/pymol-0.96-1.rh73.py22.spec removed
examples/package/redhat/pymol-0.96-1.rh80.py22.spec removed
examples/package/redhat/pymol-0.96-1.rh90.py22.spec removed

Python Programs (111 of 311):

NameStatusDeltaVisual Diff
data/chempy/sidechains/generate1.py changed 1.3% diff
data/chempy/sidechains/generate2.py changed 6.1% diff
data/chempy/sidechains/sc_bb_dep.py changed 3.6% diff
data/chempy/sidechains/sc_bb_ind.py changed 1.2% diff
data/chempy/tinker/make_simple.py changed 3.5% diff
data/startup/lightingsettings_gui/__init__.py added
data/startup/lightingsettings_gui/main.py added
examples/chempy/generate_amber.py changed 25.9% diff
examples/chempy/generate_mmff.py changed 14.0% diff
examples/cookbook/dali.py changed 15.8% diff
examples/cookbook/symsph.py changed 27.8% diff
examples/devel/cgo_label_hack.py changed 1.7% diff
examples/devel/cgo_plane.py changed 3.5% diff
examples/devel/click_ordered_list.py changed 2.8% diff
examples/devel/count_molecules.py changed 19.6% diff
examples/devel/extend_demo01.py changed 12.2% diff
examples/devel/importing.py changed 8.7% diff
examples/devel/my_ext_gui.py changed 2.4% diff
examples/devel/particle01.py changed 9.7% diff
examples/devel/particle02.py changed 7.4% diff
examples/devel/povray01.py changed 2.9% diff
examples/devel/start_pymol.py changed 10.7% diff
examples/devel/syncmol.py changed 7.2% diff
examples/devel/tkwindow.py changed 21.4% diff
examples/devel/webgui01.py changed 3.3% diff
examples/devel/webgui02.py changed 4.4% diff
examples/devel/xmlrpc01.py changed 7.2% diff
examples/devel/xmlrpc02.py changed 10.7% diff
examples/launching/launch_no_tk.py changed 54.5% diff
examples/launching/launch_viewer1.py changed 80.6% diff
examples/launching/launch_viewer2.py changed 68.8% diff
modules/chempy/pkl.py changed 60.7% diff
modules/pmg_qt/__init__.py added
modules/pmg_qt/advanced_settings_gui.py added
modules/pmg_qt/builder.py added
modules/pmg_qt/file_dialogs.py added
modules/pmg_qt/forms/__init__.py added
modules/pmg_qt/keymapping.py added
modules/pmg_qt/mimic_pmg_tk.py added
modules/pmg_qt/mimic_tk.py added
modules/pmg_qt/properties_dialog.py added
modules/pmg_qt/pymol_gl_widget.py added
modules/pmg_qt/pymol_qt_gui.py added
modules/pmg_qt/syntax/__init__.py added
modules/pmg_qt/syntax/pml.py added
modules/pmg_qt/syntax/pmlparser.py added
modules/pmg_qt/syntax/python.py added
modules/pmg_qt/TextEditor.py added
modules/pmg_qt/volume.py added
modules/pmg_tk/__init__.py changed 2.8% diff
modules/pmg_tk/skins/normal/__init__.py changed 69.0% diff
modules/pmg_tk/skins/normal/builder.py changed 0.5% diff
modules/pmg_tk/startup/apbs_tools.py changed 0.3% diff
modules/pmg_tk/startup/remote_pdb_load.py changed 1.1% diff
modules/pmg_wx/__init__.py removed
modules/pymol/__init__.py changed 12.4% diff
modules/pymol/_gui.py added
modules/pymol/api.py changed 1.3% diff
modules/pymol/cmd.py changed 5.1% diff
modules/pymol/colorprinting.py added
modules/pymol/colorramping.py changed 13.6% diff
modules/pymol/commanding.py changed 12.1% diff
modules/pymol/completing.py changed 9.6% diff
modules/pymol/computing.py changed 7.1% diff
modules/pymol/constants.py changed 12.0% diff
modules/pymol/controlling.py changed 0.7% diff
modules/pymol/creating.py changed 2.6% diff
modules/pymol/diagnosing.py added
modules/pymol/editing.py changed 5.3% diff
modules/pymol/editor.py changed 5.5% diff
modules/pymol/experimenting.py changed 1.2% diff
modules/pymol/exporting.py changed 12.5% diff
modules/pymol/externing.py changed 10.6% diff
modules/pymol/fitting.py changed 0.9% diff
modules/pymol/gui.py changed 29.0% diff
modules/pymol/helping.py changed 0.2% diff
modules/pymol/importing.py changed 16.0% diff
modules/pymol/internal.py changed 0.4% diff
modules/pymol/invocation.py changed 2.9% diff
modules/pymol/keyboard.py changed 0.3% diff
modules/pymol/keywords.py changed 1.3% diff
modules/pymol/lazyio.py added
modules/pymol/locking.py changed 3.0% diff
modules/pymol/menu.py changed 2.6% diff
modules/pymol/movie.py changed 33.2% diff
modules/pymol/moving.py changed 3.1% diff
modules/pymol/parser.py changed 12.4% diff
modules/pymol/parsing.py changed 6.7% diff
modules/pymol/plugins/__init__.py changed 13.1% diff
modules/pymol/plugins/installation.py changed 3.0% diff
modules/pymol/plugins/legacysupport.py changed 12.5% diff
modules/pymol/plugins/managergui_qt.py added
modules/pymol/plugins/repository.py changed 9.6% diff
modules/pymol/Qt/__init__.py added
modules/pymol/Qt/utils.py added
modules/pymol/querying.py changed 1.1% diff
modules/pymol/rpc.py changed 0.5% diff
modules/pymol/util.py changed 0.9% diff
modules/pymol/viewing.py changed 8.2% diff
modules/pymol/wizard/__init__.py changed 6.9% diff
modules/pymol/wizard/command.py changed 2.3% diff
modules/pymol/wizard/mutagenesis.py changed 1.3% diff
modules/pymol/wizard/sculpting.py changed 1.6% diff
modules/pymol/wizarding.py changed 3.0% diff
modules/pymol2/__init__.py changed 4.4% diff
modules/pymol2/cmd2.py changed 14.6% diff
modules/web/__init__.py removed
modules/web/pymolhttpd.py moved 16.2% diff
modules/pymol/pymolhttpd.py
monkeypatch_distutils.py changed 7.7% diff
setup.py changed 27.0% diff

Shell Programs (2 of 10):

NameStatusDeltaVisual Diff
setup/pymol.com.linux-rh7x removed
setup/pymol.com.osx-fink removed

Makefiles (10 of 14):

NameStatusDeltaVisual Diff
setup/Rules.irix-mindep removed
setup/Rules.linux removed
setup/Rules.linux-fc9 removed
setup/Rules.linux-rh7x removed
setup/Rules.make removed
setup/Rules.osx-fink removed
setup/Rules.osx-framework removed
setup/Rules.sunos5 removed
setup/Rules.sunos5-mindep removed
setup/Rules.sunos5-semistat removed

HTML Pages (1 of 26):

NameStatusDeltaVisual Diff
modules/web/examples/content/server.html changed 0.1%

Qt UI Files (all 15):

NameStatusDeltaVisual Diff
modules/pmg_qt/forms/askpartial.ui added
modules/pmg_qt/forms/colors.ui added
modules/pmg_qt/forms/fetch.ui added
modules/pmg_qt/forms/load_mae.ui added
modules/pmg_qt/forms/load_map.ui added
modules/pmg_qt/forms/load_mtz.ui added
modules/pmg_qt/forms/load_traj.ui added
modules/pmg_qt/forms/movieexport.ui added
modules/pmg_qt/forms/pluginitem.ui added
modules/pmg_qt/forms/pluginmanager.ui added
modules/pmg_qt/forms/png.ui added
modules/pmg_qt/forms/props.ui added
modules/pmg_qt/forms/render.ui added
modules/pmg_qt/forms/save_molecule.ui added
modules/pmg_qt/forms/save_object.ui added

TeX Documents (all 1):

NameStatusDeltaVisual Diff
data/pmg_qt/styles/pymol.sty added

Image Files (1 of 18):

NameStatusDeltaVisual Diff
data/pymol/splash.png changed 6.0%

Vector Image Files (all 2):

NameStatusDeltaVisual Diff
data/pmg_qt/icons/refresh.svg added
data/pymol/icons/icon2.svg added

Directories (13 of 111):

NameStatus
data/pmg_qt added
data/pmg_qt/icons added
data/pmg_qt/styles added
data/pymol/icons added
data/startup added
data/startup/lightingsettings_gui added
examples/package removed
examples/package/redhat removed
modules/pmg_qt/forms added
modules/pmg_qt/syntax added
modules/pmg_wx renamed
modules/pmg_qt
modules/pymol/Qt added

Change Logs (1 of 2):

NameStatusDeltaVisual Diff
ChangeLog changed 1.7% diff

Information Files (1 of 5):

NameStatusDeltaVisual Diff
INSTALL changed 6.5% diff

Readme Files (1 of 7):

NameStatusDeltaVisual Diff
data/startup/README.txt added

Packages Compared:

pymol-v1.8.6.0.tar.bz2
pymol-v2.1.0.tar.bz2

To the top of this page
Mainly generated by pkgdiff
Home  |  About  |  Features  |  All  |  Newest  |  Dox  |  Diffs  |  RSS Feeds  |  Screenshots  |  Comments  |  Imprint  |  Privacy  |  HTTP(S)