"Fossies" - the Fresh Open Source Software Archive  

Source code changes report for "pymol" between the packages
pymol-open-source-2.4.0.tar.gz and pymol-open-source-2.5.0.tar.gz

About: PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.

Summary:

The "pymol" source code changed by about 5.5% and now consists of 1177 regular files (-149) and 101 directories (-7).

Related Informations:

See ChangeLog (pymol 2.5.0).

Changes In Files (According File Type):

File TypeTotalAddedRemovedChanged
Header file 316 49 30 96
C program 79 0 0 3
C++ program 224 14 1 114
Patch 1 0 0 0
Python program 304 5 46 129
Shell program 1 0 1 0
JavaScript file 18 0 0 0
JSON file 2 0 0 0
Makefile 1 0 0 0
Git file 2 0 0 0
HTML page 26 0 0 0
Log file 69 0 69 0
Parameter file 1 0 0 0
Qt UI file 20 4 0 2
TeX document 1 0 0 0
YAML file 1 1 0 0
Data file 132 0 0 0
Image file 23 0 0 0
Vector Image file 4 0 0 0
X Pixmap file 10 0 0 0
Directory 111 3 10 0
Archive 8 0 0 0
Change log 1 0 0 1
Information file 4 0 0 1
License 5 0 0 0
Readme file 9 0 1 1
Text file 136 0 74 0
Other 1 0 0 0
Total Files151076232347



Header Files (175 of 316):

NameStatusDeltaVisual Diff
contrib/champ/os_python.h changed 2.0% diff
include/pymol/algorithm.h changed 100.0% diff
include/pymol/math_defines.h added
include/pymol/memory.h changed 17.4% diff
include/pymol/type_traits.h changed 15.2% diff
include/pymol/zstring_view.h changed 0.5% diff
layer0/Base.h changed 29.3% diff
layer0/Block.h changed 3.6% diff
layer0/CarveHelper.h added
layer0/ContourSurf.h added
layer0/Crystal.h changed 100.0% diff
layer0/Field.h changed 75.7% diff
layer0/GenericBuffer.h changed 0.1% diff
layer0/Isosurf.h changed 13.2% diff
layer0/Lex.h changed 1.3% diff
layer0/ListMacros.h changed 85.7% diff
layer0/Map.h changed 14.3% diff
layer0/marching_cubes.h added
layer0/Matrix.h changed 9.1% diff
layer0/MemoryDebug.h changed 9.7% diff
layer0/MemoryUsage.h added
layer0/MyPNG.h changed 24.7% diff
layer0/os_gl.h changed 8.3% diff
layer0/os_predef.h changed 2.1% diff
layer0/os_python.h changed 33.1% diff
layer0/PostProcess.h changed 5.5% diff
layer0/PyMOLEnums.h added
layer0/PyMOLGlobals.h changed 6.2% diff
layer0/Rect.h added
layer0/RenderContext.h added
layer0/RenderPass.h added
layer0/Result.h changed 13.0% diff
layer0/ShaderMgr.h changed 12.0% diff
layer0/Tetsurf.h changed 45.9% diff
layer0/Util2.h changed 20.8% diff
layer0/Vector.h changed 26.3% diff
layer0/Version.h changed 9.0% diff
layer0/vla.h changed 11.3% diff
layer1/Basis.h changed 6.0% diff
layer1/CGO.h changed 3.5% diff
layer1/Character.h changed 8.2% diff
layer1/Color.h changed 14.7% diff
layer1/Extrude.h changed 17.0% diff
layer1/Font.h changed 19.9% diff
layer1/FontGLUT.h changed 14.3% diff
layer1/FontType.h changed 29.8% diff
layer1/Image.h changed 4.8% diff
layer1/Movie.h changed 10.3% diff
layer1/Ortho.h changed 3.0% diff
layer1/P.h changed 24.9% diff
layer1/PConv.h changed 8.9% diff
layer1/Picking.h changed 1.9% diff
layer1/PyMOLObject.h changed 50.9% diff
layer1/Ray.h changed 4.9% diff
layer1/Rep.h changed 41.9% diff
layer1/Scene.h changed 13.7% diff
layer1/SceneDef.h changed 49.6% diff
layer1/SceneElem.h added
layer1/SceneMouse.h added
layer1/SceneRender.h changed 20.1% diff
layer1/SceneView.h added
layer1/Seq.h changed 74.4% diff
layer1/Setting.h changed 10.5% diff
layer1/SettingInfo.h changed 0.9% diff
layer1/Symmetry.h changed 21.8% diff
layer1/SymOp.h added
layer1/SymOpPConv.h added
layer1/SymOpTools.h added
layer1/Text.h changed 7.0% diff
layer1/Wizard.h changed 53.8% diff
layer2/AtomInfo.h changed 3.6% diff
layer2/AtomNeighbors.h added
layer2/BondTypeHistory.h changed 17.1% diff
layer2/CifFile.h changed 0.3% diff
layer2/CoordSet.h changed 27.7% diff
layer2/DistSet.h changed 22.5% diff
layer2/GadgetSet.h changed 45.2% diff
layer2/ObjectAlignment.h changed 9.2% diff
layer2/ObjectCallback.h changed 3.3% diff
layer2/ObjectCGO.h changed 22.6% diff
layer2/ObjectDist.h changed 14.0% diff
layer2/ObjectGadget.h changed 16.5% diff
layer2/ObjectGadgetRamp.h changed 6.8% diff
layer2/ObjectGroup.h changed 4.1% diff
layer2/ObjectMap.h changed 3.4% diff
layer2/ObjectMesh.h changed 10.5% diff
layer2/ObjectMolecule.h changed 15.4% diff
layer2/ObjectMolecule3.h added
layer2/ObjectSlice.h changed 5.8% diff
layer2/ObjectSurface.h changed 17.2% diff
layer2/ObjectVolume.h changed 4.8% diff
layer2/RepDot.h changed 53.3% diff
layer2/RepLabel.h changed 12.2% diff
layer2/RepSphere.h changed 34.0% diff
layer2/RepSphereGenerate.h changed 12.6% diff
layer3/AtomIterators.h changed 13.8% diff
layer3/CifDataValueFormatter.h changed 0.8% diff
layer3/Editor.h changed 22.2% diff
layer3/Executive.h changed 30.0% diff
layer3/ExecutiveDef.h added
layer3/MaeExportHelpers.h changed 11.1% diff
layer3/MoleculeExporter.h changed 18.7% diff
layer3/MovieScene.h changed 100.0% diff
layer3/PlugIOManager.h changed 8.2% diff
layer3/RingFinder.h changed 11.2% diff
layer3/Seeker.h changed 57.7% diff
layer3/Selector.h changed 4.6% diff
layer3/SelectorDef.h changed 48.8% diff
layer3/SpecRec.h changed 40.4% diff
layer3/SpecRecSpecial.h added
layer5/main.h changed 2.2% diff
layer5/PyMOL.h changed 1.1% diff
layerCTest/Test.h changed 15.3% diff
modules/cealign/src/ce_types.h moved 0.0%
layer0/ce_types.h
modules/cealign/src/tnt/jama_cholesky.h moved 0.0%
include/tnt/jama_cholesky.h
modules/cealign/src/tnt/jama_eig.h moved 0.0%
include/tnt/jama_eig.h
modules/cealign/src/tnt/jama_lu.h moved 0.0%
include/tnt/jama_lu.h
modules/cealign/src/tnt/jama_qr.h moved 0.0%
include/tnt/jama_qr.h
modules/cealign/src/tnt/jama_svd.h moved 0.0%
include/tnt/jama_svd.h
modules/cealign/src/tnt/tnt.h moved 0.0%
include/tnt/tnt.h
modules/cealign/src/tnt/tnt_array1d.h moved 0.0%
include/tnt/tnt_array1d.h
modules/cealign/src/tnt/tnt_array1d_utils.h moved 0.0%
include/tnt/tnt_array1d_utils.h
modules/cealign/src/tnt/tnt_array2d.h moved 0.0%
include/tnt/tnt_array2d.h
modules/cealign/src/tnt/tnt_array2d_utils.h moved 0.0%
include/tnt/tnt_array2d_utils.h
modules/cealign/src/tnt/tnt_array3d.h moved 0.0%
include/tnt/tnt_array3d.h
modules/cealign/src/tnt/tnt_array3d_utils.h moved 0.0%
include/tnt/tnt_array3d_utils.h
modules/cealign/src/tnt/tnt_fortran_array1d.h moved 0.0%
include/tnt/tnt_fortran_array1d.h
modules/cealign/src/tnt/tnt_fortran_array1d_utils.h moved 0.0%
include/tnt/tnt_fortran_array1d_utils.h
modules/cealign/src/tnt/tnt_fortran_array2d.h moved 0.0%
include/tnt/tnt_fortran_array2d.h
modules/cealign/src/tnt/tnt_fortran_array2d_utils.h moved 0.0%
include/tnt/tnt_fortran_array2d_utils.h
modules/cealign/src/tnt/tnt_fortran_array3d.h moved 0.0%
include/tnt/tnt_fortran_array3d.h
modules/cealign/src/tnt/tnt_fortran_array3d_utils.h moved 0.0%
include/tnt/tnt_fortran_array3d_utils.h
modules/cealign/src/tnt/tnt_i_refvec.h moved 0.0%
include/tnt/tnt_i_refvec.h
modules/cealign/src/tnt/tnt_lapack.h moved 0.0%
include/tnt/tnt_lapack.h
modules/cealign/src/tnt/tnt_linalg.h moved 0.0%
include/tnt/tnt_linalg.h
modules/cealign/src/tnt/tnt_math_utils.h moved 0.0%
include/tnt/tnt_math_utils.h
modules/cealign/src/tnt/tnt_matrix.h moved 0.0%
include/tnt/tnt_matrix.h
modules/cealign/src/tnt/tnt_sparse_matrix.h moved 0.0%
include/tnt/tnt_sparse_matrix.h
modules/cealign/src/tnt/tnt_sparse_vector.h moved 0.0%
include/tnt/tnt_sparse_vector.h
modules/cealign/src/tnt/tnt_stopwatch.h moved 0.0%
include/tnt/tnt_stopwatch.h
modules/cealign/src/tnt/tnt_subscript.h moved 0.0%
include/tnt/tnt_subscript.h
modules/cealign/src/tnt/tnt_vector.h moved 0.0%
include/tnt/tnt_vector.h
modules/cealign/src/tnt/tnt_version.h moved 0.0%
include/tnt/tnt_version.h
ov/src/ov_port.h changed 9.6% diff
ov/src/ov_types.h changed 0.4% diff

C Programs (3 of 79):

NameStatusDeltaVisual Diff
contrib/champ/champ_module.c changed 1.1% diff
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c changed 0.8% diff
data/shaders/volume.vs changed 17.0% diff

C++ Programs (129 of 224):

NameStatusDeltaVisual Diff
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp changed 0.2% diff
layer0/CarveHelper.cpp added
layer0/ContourSurf.cpp added
layer0/Crystal.cpp changed 55.4% diff
layer0/Field.cpp changed 1.3% diff
layer0/File.cpp changed 0.5% diff
layer0/GraphicsUtil.cpp changed 23.9% diff
layer0/Isosurf.cpp changed 3.0% diff
layer0/Map.cpp changed 8.7% diff
layer0/marching_cubes.cpp added
layer0/Matrix.cpp changed 60.3% diff
layer0/MemoryUsage.cpp added
layer0/MyPNG.cpp changed 1.1% diff
layer0/Parse.cpp changed 0.6% diff
layer0/ShaderMgr.cpp changed 6.4% diff
layer0/ShaderPrg.cpp changed 26.5% diff
layer0/Tetsurf.cpp changed 11.8% diff
layer0/Util.cpp changed 0.05% diff
layer0/Util2.cpp changed 16.5% diff
layer0/Vector.cpp changed 4.4% diff
layer1/Basis.cpp changed 0.4% diff
layer1/ButMode.cpp changed 0.5% diff
layer1/CGO.cpp changed 8.4% diff
layer1/Character.cpp changed 1.9% diff
layer1/COLLADA.cpp changed 1.6% diff
layer1/Color.cpp changed 59.2% diff
layer1/Extrude.cpp changed 9.0% diff
layer1/FontGLUT.cpp changed 2.8% diff
layer1/FontType.cpp changed 3.5% diff
layer1/Movie.cpp changed 1.6% diff
layer1/Ortho.cpp changed 2.2% diff
layer1/P.cpp changed 28.7% diff
layer1/PConv.cpp changed 5.9% diff
layer1/Picking.cpp changed 1.8% diff
layer1/PyMOLObject.cpp changed 13.7% diff
layer1/Ray.cpp changed 1.2% diff
layer1/Rep.cpp changed 50.9% diff
layer1/Scene.cpp changed 31.2% diff
layer1/SceneMouse.cpp added
layer1/ScenePicking.cpp changed 1.2% diff
layer1/SceneRay.cpp changed 0.7% diff
layer1/SceneRender.cpp changed 4.7% diff
layer1/Seq.cpp changed 9.2% diff
layer1/Setting.cpp changed 4.9% diff
layer1/Symmetry.cpp changed 22.5% diff
layer1/SymOp.cpp added
layer1/SymOpPConv.cpp added
layer1/SymOpTools.cpp added
layer1/Text.cpp changed 4.2% diff
layer1/Wizard.cpp changed 52.4% diff
layer2/AssemblyHelpers.cpp changed 11.6% diff
layer2/AtomInfo.cpp changed 3.0% diff
layer2/BondTypeHistory.cpp changed 53.4% diff
layer2/CifFile.cpp changed 5.4% diff
layer2/CifMoleculeReader.cpp changed 7.1% diff
layer2/CoordSet.cpp changed 45.8% diff
layer2/DistSet.cpp changed 23.4% diff
layer2/GadgetSet.cpp changed 24.8% diff
layer2/HydrogenAdder.cpp changed 9.8% diff
layer2/MmodTyping.cpp changed 0.1% diff
layer2/MmtfMoleculeReader.cpp changed 8.5% diff
layer2/Mol2Typing.cpp changed 20.3% diff
layer2/MolV3000.cpp changed 0.3% diff
layer2/ObjectAlignment.cpp changed 2.1% diff
layer2/ObjectCallback.cpp changed 3.8% diff
layer2/ObjectCGO.cpp changed 31.7% diff
layer2/ObjectDist.cpp changed 19.1% diff
layer2/ObjectGadget.cpp changed 4.8% diff
layer2/ObjectGadgetRamp.cpp changed 1.1% diff
layer2/ObjectGroup.cpp changed 2.9% diff
layer2/ObjectMap.cpp changed 7.2% diff
layer2/ObjectMesh.cpp changed 11.0% diff
layer2/ObjectMolecule.cpp changed 11.4% diff
layer2/ObjectMolecule2.cpp changed 23.1% diff
layer2/ObjectMolecule3.cpp added
layer2/ObjectSlice.cpp changed 4.3% diff
layer2/ObjectSurface.cpp changed 12.7% diff
layer2/ObjectVolume.cpp changed 2.2% diff
layer2/RepAngle.cpp changed 21.2% diff
layer2/RepCartoon.cpp changed 13.4% diff
layer2/RepCylBond.cpp changed 20.4% diff
layer2/RepDihedral.cpp changed 16.6% diff
layer2/RepDistDash.cpp changed 18.3% diff
layer2/RepDistLabel.cpp changed 28.4% diff
layer2/RepDot.cpp changed 66.3% diff
layer2/RepEllipsoid.cpp changed 20.9% diff
layer2/RepLabel.cpp changed 4.1% diff
layer2/RepMesh.cpp changed 13.7% diff
layer2/RepNonbonded.cpp changed 17.0% diff
layer2/RepNonbondedSphere.cpp changed 39.7% diff
layer2/RepRibbon.cpp changed 20.3% diff
layer2/RepSphere.cpp changed 27.6% diff
layer2/RepSphereGenerate.cpp changed 28.5% diff
layer2/RepSphereImmediate.cpp changed 32.4% diff
layer2/RepSurface.cpp changed 11.3% diff
layer2/RepWireBond.cpp changed 13.4% diff
layer2/Sculpt.cpp changed 5.7% diff
layer2/SideChainHelper.cpp changed 0.2% diff
layer2/VFont.cpp changed 0.9% diff
layer3/AtomIterators.cpp changed 7.0% diff
layer3/CifDataValueFormatter.cpp changed 0.7% diff
layer3/Editor.cpp changed 2.7% diff
layer3/Executive.cpp changed 12.3% diff
layer3/ExecutivePython.cpp changed 5.9% diff
layer3/MaeExportHelpers.cpp changed 3.0% diff
layer3/MoleculeExporter.cpp changed 6.6% diff
layer3/MovieScene.cpp changed 21.3% diff
layer3/PlugIOManager.cpp changed 5.6% diff
layer3/RingFinder.cpp changed 17.1% diff
layer3/Seeker.cpp changed 25.0% diff
layer3/Selector.cpp changed 5.7% diff
layer3/SpecRec.cpp added
layer3/SpecRecSpecial.cpp added
layer4/Cmd.cpp changed 17.2% diff
layer4/PopUp.cpp changed 2.8% diff
layer5/main.cpp changed 0.8% diff
layer5/PyMOL.cpp changed 5.7% diff
layer5/TestPyMOL.cpp changed 1.4% diff
layerCTest/Test.cpp changed 26.6% diff
layerCTest/Test_Algorithm.cpp changed 100.0% diff
layerCTest/Test_CCrystal.cpp added
layerCTest/Test_Image.cpp changed 0.7% diff
layerCTest/Test_Result.cpp changed 2.4% diff
layerCTest/Test_ScrollBar.cpp changed 23.2% diff
layerCTest/Test_SymOp.cpp added
layerCTest/Test_Util.cpp changed 9.0% diff
layerCTest/Test_VLA.cpp changed 14.1% diff
modules/cealign/src/ccealignmodule.cpp moved 0.2% diff
layer0/ccealignmodule.cpp

Python Programs (180 of 304):

NameStatusDeltaVisual Diff
contrib/uiuc/plugins/molfile_plugin/update.py changed 6.4% diff
create_shadertext.py changed 2.6% diff
data/demo/cgo03.py changed 8.4% diff
examples/devel/importing.py changed 4.7% diff
examples/devel/syncmol.py changed 0.8% diff
modules/chempy/__init__.py changed 1.8% diff
modules/chempy/bmin/__init__.py changed 2.9% diff
modules/chempy/cc1.py changed 9.6% diff
modules/chempy/champ/__init__.py changed 0.4% diff
modules/chempy/champ/assign.py changed 0.5% diff
modules/chempy/charge.py changed 1.0% diff
modules/chempy/cif.py changed 0.2% diff
modules/chempy/dictdb.py changed 0.5% diff
modules/chempy/gamess1.py changed 0.2% diff
modules/chempy/mmd.py changed 6.3% diff
modules/chempy/mmtf/io.py changed 2.5% diff
modules/chempy/models.py changed 0.2% diff
modules/chempy/mol.py changed 6.8% diff
modules/chempy/mol2.py changed 1.1% diff
modules/chempy/pdb.py changed 11.1% diff
modules/chempy/pkl.py changed 1.3% diff
modules/chempy/place.py changed 0.3% diff
modules/chempy/protein.py changed 0.2% diff
modules/chempy/protein_mmff.py changed 0.1% diff
modules/chempy/sdf.py changed 6.9% diff
modules/chempy/solvate.py changed 2.0% diff
modules/chempy/tinker/amber.py changed 7.5% diff
modules/chempy/tinker/state.py changed 2.6% diff
modules/chempy/xyz.py changed 1.3% diff
modules/pmg_qt/builder.py changed 0.1% diff
modules/pmg_qt/file_dialogs.py changed 7.8% diff
modules/pmg_qt/keymapping.py changed 39.2% diff
modules/pmg_qt/mimic_pmg_tk.py changed 3.0% diff
modules/pmg_qt/mimic_tk.py changed 25.8% diff
modules/pmg_qt/properties_dialog.py changed 100.0% diff
modules/pmg_qt/pymol_gl_widget.py changed 14.2% diff
modules/pmg_qt/pymol_qt_gui.py changed 3.7% diff
modules/pmg_qt/shortcut_menu_gui.py added
modules/pmg_qt/syntax/__init__.py changed 16.3% diff
modules/pmg_qt/syntax/pml.py changed 2.3% diff
modules/pmg_qt/syntax/pmlparser.py changed 8.7% diff
modules/pmg_qt/syntax/python.py changed 2.3% diff
modules/pmg_qt/TextEditor.py changed 1.6% diff
modules/pmg_qt/volume.py changed 1.7% diff
modules/pmg_tk/ColorEditor.py changed 4.0% diff
modules/pmg_tk/PMGApp.py changed 1.3% diff
modules/pmg_tk/PyMOLMapLoad.py changed 1.7% diff
modules/pmg_tk/SetEditor.py changed 1.2% diff
modules/pmg_tk/Setting.py changed 1.8% diff
modules/pmg_tk/skins/demo/__init__.py changed 5.8% diff
modules/pmg_tk/skins/normal/__init__.py changed 1.7% diff
modules/pmg_tk/skins/normal/builder.py changed 0.4% diff
modules/pmg_tk/skins/normal/ModalWindow.py changed 2.1% diff
modules/pmg_tk/startup/apbs_tools.py removed
modules/pmg_tk/TextEditor.py changed 3.0% diff
modules/pmg_tk/volume.py changed 0.2% diff
modules/pymol/__init__.py changed 8.1% diff
modules/pymol/__main__.py changed 34.7% diff
modules/pymol/_gui.py changed 1.3% diff
modules/pymol/api.py changed 1.7% diff
modules/pymol/cgo.py changed 2.5% diff
modules/pymol/checking.py changed 10.0% diff
modules/pymol/cmd.py changed 8.7% diff
modules/pymol/colorprinting.py changed 11.9% diff
modules/pymol/colorramping.py changed 3.3% diff
modules/pymol/commanding.py changed 1.6% diff
modules/pymol/completing.py changed 2.3% diff
modules/pymol/computing.py changed 94.6% diff
modules/pymol/constants.py changed 4.1% diff
modules/pymol/contrib/__init__.py removed
modules/pymol/controlling.py changed 2.1% diff
modules/pymol/creating.py changed 1.5% diff
modules/pymol/editing.py changed 7.4% diff
modules/pymol/editor.py changed 6.9% diff
modules/pymol/exporting.py changed 23.9% diff
modules/pymol/externing.py changed 3.4% diff
modules/pymol/feedingback.py changed 0.8% diff
modules/pymol/fitting.py changed 18.8% diff
modules/pymol/headering.py changed 0.3% diff
modules/pymol/helping.py changed 3.5% diff
modules/pymol/importing.py changed 15.0% diff
modules/pymol/internal.py changed 7.0% diff
modules/pymol/invocation.py changed 0.9% diff
modules/pymol/keyboard.py changed 96.9% diff
modules/pymol/keywords.py changed 0.9% diff
modules/pymol/lazyio.py changed 2.7% diff
modules/pymol/locking.py changed 3.1% diff
modules/pymol/menu.py changed 0.6% diff
modules/pymol/movie.py changed 4.8% diff
modules/pymol/moving.py changed 1.8% diff
modules/pymol/mpeg_encode.py added
modules/pymol/opengl/__init__.py removed
modules/pymol/opengl/gl/__init__.py removed
modules/pymol/opengl/glu/__init__.py removed
modules/pymol/opengl/glut/__init__.py removed
modules/pymol/parser.py changed 5.8% diff
modules/pymol/parsing.py changed 19.3% diff
modules/pymol/plugins/__init__.py changed 5.7% diff
modules/pymol/plugins/installation.py changed 0.4% diff
modules/pymol/plugins/legacysupport.py changed 10.4% diff
modules/pymol/plugins/managergui.py changed 0.7% diff
modules/pymol/plugins/repository.py changed 2.0% diff
modules/pymol/preset.py changed 5.6% diff
modules/pymol/pymolhttpd.py changed 1.4% diff
modules/pymol/Qt/__init__.py changed 14.3% diff
modules/pymol/Qt/utils.py changed 3.6% diff
modules/pymol/querying.py changed 9.2% diff
modules/pymol/rpc.py changed 1.1% diff
modules/pymol/save_shortcut.py added
modules/pymol/selecting.py changed 5.5% diff
modules/pymol/setting.py changed 23.7% diff
modules/pymol/shortcut.py changed 8.9% diff
modules/pymol/shortcut_dict.py added
modules/pymol/shortcut_manager.py added
modules/pymol/util.py changed 1.0% diff
modules/pymol/viewing.py changed 20.7% diff
modules/pymol/wizard/annotation.py changed 1.6% diff
modules/pymol/wizard/appearance.py changed 0.5% diff
modules/pymol/wizard/benchmark.py changed 0.4% diff
modules/pymol/wizard/box.py changed 0.3% diff
modules/pymol/wizard/charge.py changed 0.4% diff
modules/pymol/wizard/command.py changed 42.9% diff
modules/pymol/wizard/density.py changed 0.4% diff
modules/pymol/wizard/distance.py changed 0.7% diff
modules/pymol/wizard/dragging.py changed 3.3% diff
modules/pymol/wizard/fedora.py removed
modules/pymol/wizard/filter.py changed 0.3% diff
modules/pymol/wizard/measurement.py changed 0.2% diff
modules/pymol/wizard/message.py changed 16.3% diff
modules/pymol/wizard/mutagenesis.py changed 0.1% diff
modules/pymol/wizard/nucmutagenesis.py changed 0.8% diff
modules/pymol/wizard/pair_fit.py changed 0.7% diff
modules/pymol/wizard/security.py changed 2.2% diff
modules/pymol/wizard/stereodemo.py changed 2.3% diff
modules/pymol/wizard/toggle.py changed 9.4% diff
modules/pymol/wizarding.py changed 4.7% diff
modules/pymol/xray.py changed 0.04% diff
modules/pymol2/__init__.py changed 4.3% diff
modules/pymol2/cmd2.py changed 8.4% diff
monkeypatch_distutils.py changed 0.4% diff
setup.py changed 13.8% diff
test/cyg removed
test/headerTest.py removed
test/inp/B01.py removed
test/inp/B02.py removed
test/inp/B03.py removed
test/inp/B04.py removed
test/inp/B05.py removed
test/inp/B06.py removed
test/inp/B07.py removed
test/inp/B08.py removed
test/inp/B09.py removed
test/inp/B10.py removed
test/inp/B11.py removed
test/inp/C1050fitting.py removed
test/inp/C1060controlling.py removed
test/inp/C1070exporting.pml removed
test/inp/C1100do.py removed
test/inp/C2000returns.py removed
test/inp/M0001new.pml removed
test/inp/M0002start.pml removed
test/inp/M0010load.pml removed
test/inp/M0020multi.pml removed
test/inp/M0021multi.pml removed
test/inp/M0025view.pml removed
test/inp/M0030scene.pml removed
test/inp/M0040do.pml removed
test/inp/M0041do.pml removed
test/inp/M0050session.pml removed
test/inp/M0051session.pml removed
test/inp/M0052session.pml removed
test/inp/M0053session.pml removed
test/inp/T01.py removed
test/inp/T02.py removed
test/inp/T03.py removed
test/inp/T04.py removed
test/run removed
test/show removed
test/trim.py removed
test/win.py removed

Shell Programs (all 1):

NameStatusDeltaVisual Diff
test/vdiff removed

Log Files (all 69):

NameStatusDeltaVisual Diff
test/ref/C0001quit.log removed
test/ref/C0010hello.log removed
test/ref/C0020pdb.log removed
test/ref/C0021pdbstr.log removed
test/ref/C0025mol.log removed
test/ref/C0026sdf.log removed
test/ref/C0027mol2.log removed
test/ref/C0030pkl.log removed
test/ref/C0050multi.log removed
test/ref/C0060delete.log removed
test/ref/C0070rep.log removed
test/ref/C0080create.log removed
test/ref/C0100select.log removed
test/ref/C0105names.log removed
test/ref/C0106order.log removed
test/ref/C0140iterate.log removed
test/ref/C0150alter.log removed
test/ref/C0160get.log removed
test/ref/C0170scene.log removed
test/ref/C0180embed.log removed
test/ref/C0181embed.log removed
test/ref/C0200feedback.log removed
test/ref/C0201extend.log removed
test/ref/C0202help_python.log removed
test/ref/C0300session.log removed
test/ref/C0500misc.log removed
test/ref/C0550pseudo.log removed
test/ref/C0600util.log removed
test/ref/C0700odd.log removed
test/ref/C0740multipdb.log removed
test/ref/C0800matrices.log removed
test/ref/C1000viewing.log removed
test/ref/C1010helping.log removed
test/ref/C1020querying.log removed
test/ref/C1030selecting.log removed
test/ref/C1035wildcards.log removed
test/ref/C1040editing.log removed
test/ref/C1050fitting.log removed
test/ref/C1060controlling.log removed
test/ref/C1070exporting.log removed
test/ref/C1080isomore.log removed
test/ref/C1090coulomb.log removed
test/ref/C1095slice.log removed
test/ref/C1100do.log removed
test/ref/C1110matrix_mode.log removed
test/ref/C1200matrix_maps.log removed
test/ref/C1300extras.log removed
test/ref/C2000returns.log removed
test/ref/L0010ccp4read.log removed
test/ref/L0020xplorread.log removed
test/ref/L0030isomesh.log removed
test/ref/L0040isomesh2.log removed
test/ref/L0100isomisc.log removed
test/ref/L0200electro.log removed
test/ref/M0001new.log removed
test/ref/M0002start.log removed
test/ref/M0010load.log removed
test/ref/M0020multi.log removed
test/ref/M0021multi.log removed
test/ref/M0025view.log removed
test/ref/M0030scene.log removed
test/ref/M0040do.log removed
test/ref/M0041do.log removed
test/ref/M0050session.log removed
test/ref/M0051session.log removed
test/ref/M0052session.log removed
test/ref/M0053session.log removed
test/ref/T01.log removed
test/ref/U01.log removed

Qt UI Files (6 of 20):

NameStatusDeltaVisual Diff
modules/pmg_qt/forms/change_confirm.ui added
modules/pmg_qt/forms/create_shortcut.ui added
modules/pmg_qt/forms/help_shortcut.ui added
modules/pmg_qt/forms/load_mae.ui changed 10.3% diff
modules/pmg_qt/forms/load_traj.ui changed 1.5% diff
modules/pmg_qt/forms/shortcut_menu.ui added

YAML Files (all 1):

NameStatusDeltaVisual Diff
.github/workflows/build.yml added

Directories (13 of 111):

NameStatus
.github added
.github/workflows added
modules/cealign removed
modules/cealign/src removed
modules/cealign/src/tnt moved
include/tnt
modules/pymol/contrib removed
modules/pymol/opengl removed
modules/pymol/opengl/gl removed
modules/pymol/opengl/glu removed
modules/pymol/opengl/glut removed
test/inp removed
test/ref removed

Change Logs (all 1):

NameStatusDeltaVisual Diff
ChangeLog changed 0.6% diff

Information Files (1 of 4):

NameStatusDeltaVisual Diff
INSTALL changed 1.0% diff

Readme Files (2 of 9):

NameStatusDeltaVisual Diff
README.md changed 25.6% diff
test/README removed

Text Files (74 of 136):

NameStatusDeltaVisual Diff
data/shaders/sphere_arb_fs.fs removed
data/shaders/sphere_arb_vs.vs removed
test/inp/C0001quit.pml removed
test/inp/C0010hello.pml removed
test/inp/C0020pdb.pml removed
test/inp/C0021pdbstr.pml removed
test/inp/C0025mol.pml removed
test/inp/C0026sdf.pml removed
test/inp/C0027mol2.pml removed
test/inp/C0030pkl.pml removed
test/inp/C0050multi.pml removed
test/inp/C0060delete.pml removed
test/inp/C0070rep.pml removed
test/inp/C0080create.pml removed
test/inp/C0100select.pml removed
test/inp/C0105names.pml removed
test/inp/C0106order.pml removed
test/inp/C0140iterate.pml removed
test/inp/C0150alter.pml removed
test/inp/C0160get.pml removed
test/inp/C0170scene.pml removed
test/inp/C0180embed.pml removed
test/inp/C0181embed.pml removed
test/inp/C0200feedback.pml removed
test/inp/C0201extend.pml removed
test/inp/C0202help_python.pml removed
test/inp/C0300session.pml removed
test/inp/C0500misc.pml removed
test/inp/C0550pseudo.pml removed
test/inp/C0600util.pml removed
test/inp/C0700odd.pml removed
test/inp/C0740multipdb.pml removed
test/inp/C0800matrices.pml removed
test/inp/C1000viewing.pml removed
test/inp/C1010helping.pml removed
test/inp/C1020querying.pml removed
test/inp/C1030selecting.pml removed
test/inp/C1035wildcards.pml removed
test/inp/C1040editing.pml removed
test/inp/C1080isomore.pml removed
test/inp/C1090coulomb.pml removed
test/inp/C1095slice.pml removed
test/inp/C1110matrix_mode.pml removed
test/inp/C1200matrix_maps.pml removed
test/inp/C1300extras.pml removed
test/inp/L0010ccp4read.pml removed
test/inp/L0020xplorread.pml removed
test/inp/L0030isomesh.pml removed
test/inp/L0040isomesh2.pml removed
test/inp/L0100isomisc.pml removed
test/inp/L0200electro.pml removed
test/inp/U01.pml removed
test/ref/C0020pdb.pdb removed
test/ref/C0030pkl.pdb removed
test/ref/C0080create.1.pdb removed
test/ref/C0080create.2.pdb removed
test/ref/C0150alter.1.pdb removed
test/ref/C0700.odd.G.pdb removed
test/ref/C0700.odd.H.pdb removed
test/ref/C0700odd.1.pdb removed
test/ref/C0700odd.2.pdb removed
test/ref/C0700odd.3.pdb removed
test/ref/C0700odd.4.pdb removed
test/ref/C0700odd.5.pdb removed
test/ref/C0700odd.6.pdb removed
test/ref/C0700odd.7.pdb removed
test/ref/C0700odd.8.pdb removed
test/ref/C0700odd.9.pdb removed
test/ref/C0700odd.A.pdb removed
test/ref/C0700odd.B.pdb removed
test/ref/C0700odd.C.pdb removed
test/ref/C0700odd.D.pdb removed
test/ref/C0700odd.E.pdb removed
test/ref/C0700odd.F.pdb removed

Packages Compared:

pymol-open-source-2.4.0.tar.gz
pymol-open-source-2.5.0.tar.gz


Home  |  About  |  Features  |  All  |  Newest  |  Dox  |  Diffs  |  RSS Feeds  |  Screenshots  |  Comments  |  Imprint  |  Privacy  |  HTTP(S)