is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.
| editing.py (pymol-open-source-2.2.0) | : | editing.py (pymol-open-source-2.3.0) |
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| | |
| skipping to change at line 17 | | skipping to change at line 17 |
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| #G* Please see the accompanying LICENSE file for further information. | | #G* Please see the accompanying LICENSE file for further information. |
| #H* ------------------------------------------------------------------- | | #H* ------------------------------------------------------------------- |
| #I* Additional authors of this source file include: | | #I* Additional authors of this source file include: |
| #-* | | #-* |
| #-* | | #-* |
| #-* | | #-* |
| #Z* ------------------------------------------------------------------- | | #Z* ------------------------------------------------------------------- |
| | |
| from __future__ import print_function | | from __future__ import print_function |
| | |
|
| if __name__=='pymol.editing': | | if True: |
| | |
| import pymol | | import pymol |
| import math | | import math |
| from . import selector | | from . import selector |
| cmd = __import__("sys").modules["pymol.cmd"] | | cmd = __import__("sys").modules["pymol.cmd"] |
| from .cmd import _cmd,lock,unlock,Shortcut,is_string, \ | | from .cmd import _cmd,lock,unlock,Shortcut,is_string, \ |
| boolean_sc,boolean_dict,safe_list_eval, is_sequence, \ | | boolean_sc,boolean_dict,safe_list_eval, is_sequence, \ |
| DEFAULT_ERROR, DEFAULT_SUCCESS, _raising, is_ok, is_error | | DEFAULT_ERROR, DEFAULT_SUCCESS, _raising, is_ok, is_error |
| from chempy import cpv | | from chempy import cpv |
| | |
| | |
| skipping to change at line 948 | | skipping to change at line 948 |
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| selection = string: atoms to drag. If not provided, and dragging | | selection = string: atoms to drag. If not provided, and dragging |
| is active, then dragging is instead deactivated. | | is active, then dragging is instead deactivated. |
| | |
| NOTES | | NOTES |
| | |
| Currently, the selection of atom to drag must all reside in a | | Currently, the selection of atom to drag must all reside in a |
| single molecular object. | | single molecular object. |
| | |
| ''' | | ''' |
|
| | import pymol.wizard.dragging |
| | |
| quiet = int(quiet) | | quiet = int(quiet) |
| if (selection!=None) and (selection!=""): | | if (selection!=None) and (selection!=""): |
| selection = selector.process(selection) | | selection = selector.process(selection) |
| if is_string(edit): | | if is_string(edit): |
| edit=boolean_dict[boolean_sc.auto_err(edit,'boolean')] | | edit=boolean_dict[boolean_sc.auto_err(edit,'boolean')] |
| if is_string(wizard): | | if is_string(wizard): |
| wizard=boolean_dict[boolean_sc.auto_err(wizard,'boolean')] | | wizard=boolean_dict[boolean_sc.auto_err(wizard,'boolean')] |
| edit = int(edit) | | edit = int(edit) |
| wizard = int(wizard) | | wizard = int(wizard) |
| old_button_mode = _self.get('button_mode') | | old_button_mode = _self.get('button_mode') |
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| skipping to change at line 976 | | skipping to change at line 978 |
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| r = _cmd.drag(_self._COb,str(selection),int(quiet),int(mode)) | | r = _cmd.drag(_self._COb,str(selection),int(quiet),int(mode)) |
| finally: | | finally: |
| _self.unlock(r,_self) | | _self.unlock(r,_self) |
| if not is_error(r): | | if not is_error(r): |
| if edit: | | if edit: |
| _self.edit_mode(edit) | | _self.edit_mode(edit) |
| if wizard: | | if wizard: |
| wiz = _self.get_wizard() | | wiz = _self.get_wizard() |
| if (wiz == None): | | if (wiz == None): |
| _self.wizard("dragging",old_button_mode) | | _self.wizard("dragging",old_button_mode) |
|
| elif wiz.__class__ != 'pymol.wizard.dragging.Dragging': | | elif not isinstance(wiz, pymol.wizard.dragging.Dragging): |
| _self.wizard("dragging",old_button_mode) | | _self.wizard("dragging",old_button_mode) |
| else: | | else: |
| wiz.recount() | | wiz.recount() |
| if _self._raising(r,_self): raise pymol.CmdException | | if _self._raising(r,_self): raise pymol.CmdException |
| return r | | return r |
| | |
| def edit(selection1='', selection2='none', selection3='none', | | def edit(selection1='', selection2='none', selection3='none', |
| selection4='none', pkresi=0, pkbond=1, quiet=1, _self=cmd): | | selection4='none', pkresi=0, pkbond=1, quiet=1, _self=cmd): |
| ''' | | ''' |
| DESCRIPTION | | DESCRIPTION |
| | | |
| End of changes. 3 change blocks. |
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| 2 lines changed or deleted | | 4 lines changed or added |
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