"Fossies" - the Fresh Open Source Software Archive  

Source code changes of the file "modules/pymol/diagnosing.py" between
pymol-open-source-2.2.0.tar.gz and pymol-open-source-2.3.0.tar.gz

About: PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.

diagnosing.py  (pymol-open-source-2.2.0)	:	diagnosing.py  (pymol-open-source-2.3.0)
import sys		import sys
		def _unicode(s):
		# Return - if possible - unicode, or if the byte string can't be
		# decoded, return an all-ascii representation (which is fine for
		# reporting in diagnostics)
		if isinstance(s, bytes):
		try:
		s = s.decode(sys.getfilesystemencoding() or 'ascii')
		except UnicodeError:
		s = repr(s)
		return s
def diagnostics(filename='', compact=0, quiet=1):		def diagnostics(filename='', compact=0, quiet=1):
'''		'''
DESCRIPTION		DESCRIPTION
Get system level diagnostics data		Get system level diagnostics data
USAGE		USAGE
diagnostics [ filename ]		diagnostics [ filename ]
ARGUMENTS		ARGUMENTS
filename = str: If given, write output to text file		filename = str: If given, write output to text file
'''		'''
import pymol		import platform
raise pymol.IncentiveOnlyException()		import os
		import re
		import glob
		import time
		import textwrap
		from pymol import invocation
		from pymol import cmd, CmdException
		compact, quiet = int(compact), int(quiet)
		TZ = '%+05d' % (time.timezone / 36)
		version = cmd.get_version()
		body = u'PyMOL %s\n' % version[0]
		if not compact:
		if version[3]:
		body += 'build date: %s %s\n' % (time.ctime(version[3]), TZ)
		if version[4]:
		body += 'git sha: %s\n' % version[4]
		if version[5]:
		body += "svn rev: %s\n" % version[5]
		try:
		# pymol conda package version
		condameta = glob.glob(os.path.join(sys.prefix, 'conda-meta',
		'pymol-' + version[0] + '*.json'))
		if condameta:
		import json
		d = json.load(open(condameta[0]))
		body += 'conda build: %s %s\n' % (d.get('build'),
		d.get('schannel') or d.get('channel'))
		except BaseException as e:
		print(e)
		if not compact:
		body += '\nLicense Information:\n'
		body += 'Open-Source Build\n'
		if not compact:
		body += '\nOperating System:\n'
		body += platform.platform() + '\n'
		if platform.system() == 'Linux':
		body += platform.version() + '\n'
		if not compact:
		body += '\nOpenGL Driver:\n'
		renderer = cmd.get_renderer()
		body += str(renderer[0] or '(none)') + '\n'
		body += str(renderer[1] or '(none)') + '\n'
		body += str(renderer[2] or '(none)') + '\n'
		try:
		from pymol.Qt import QtCore
		body += '%s %s (Qt %s)\n' % (
		QtCore.__name__.split('.')[0],
		QtCore.PYQT_VERSION_STR,
		QtCore.QT_VERSION_STR)
		except Exception as e:
		body += '(%s)\n' % (e,)
		if not compact:
		body += '\nPython:\n'
		body += '%s\n' % sys.version
		body += 'prefix=%s\n' % _unicode(sys.prefix)
		body += 'executable=%s\n' % _unicode(sys.executable)
		body += u'filesystemencoding={}\n'.format(sys.getfilesystemencoding())
		body += '\nStartup Scripts:\n'
		pymolrc = invocation.get_user_config()
		if pymolrc:
		pymolrc = map(_unicode, pymolrc)
		body += '\n'.join(pymolrc) + '\n'
		else:
		body += '(no pymolrc file found)\n'
		body += '\nQt, Python and PyMOL Environment Variables:\n'
		for key in sorted(os.environ):
		if re.search(r'^PY|QT|^LANG', key) and not (key == 'PYMOL_SCRIPTS'):
		body += u'%s=%s\n' % (key, _unicode(os.environ[key]))
		body += '\nPATH:\n'
		body += textwrap.fill(_unicode(os.getenv('PATH', '')), 78) + '\n'
		body += '\nDiagnostics collected on %s %s\n' % (time.ctime(), TZ)
		if filename:
		filename = cmd.exp_path(filename)
		if not filename.endswith('.txt'):
		raise CmdException('filename must have .txt extension')
		with open(filename, 'w') as handle:
		handle.write(body)
		print('Diagnostics written to "%s"' % filename)
		elif not quiet:
		print(body.rstrip())
		return body
End of changes. 2 change blocks.
0 lines changed or deleted		11 lines changed or added

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