"Fossies" - the Fresh Open Source Software Archive  

Source code changes of the file "modules/pymol/diagnosing.py" between
pymol-open-source-2.2.0.tar.gz and pymol-open-source-2.3.0.tar.gz

About: PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.

diagnosing.py  (pymol-open-source-2.2.0):diagnosing.py  (pymol-open-source-2.3.0)
import sys import sys
def _unicode(s):
# Return - if possible - unicode, or if the byte string can't be
# decoded, return an all-ascii representation (which is fine for
# reporting in diagnostics)
if isinstance(s, bytes):
s = s.decode(sys.getfilesystemencoding() or 'ascii')
except UnicodeError:
s = repr(s)
return s
def diagnostics(filename='', compact=0, quiet=1): def diagnostics(filename='', compact=0, quiet=1):
''' '''
Get system level diagnostics data Get system level diagnostics data
diagnostics [ filename ] diagnostics [ filename ]
filename = str: If given, write output to text file filename = str: If given, write output to text file
''' '''
import pymol import platform
raise pymol.IncentiveOnlyException() import os
import re
import glob
import time
import textwrap
from pymol import invocation
from pymol import cmd, CmdException
compact, quiet = int(compact), int(quiet)
TZ = '%+05d' % (time.timezone / 36)
version = cmd.get_version()
body = u'PyMOL %s\n' % version[0]
if not compact:
if version[3]:
body += 'build date: %s %s\n' % (time.ctime(version[3]), TZ)
if version[4]:
body += 'git sha: %s\n' % version[4]
if version[5]:
body += "svn rev: %s\n" % version[5]
# pymol conda package version
condameta = glob.glob(os.path.join(sys.prefix, 'conda-meta',
'pymol-' + version[0] + '*.json'))
if condameta:
import json
d = json.load(open(condameta[0]))
body += 'conda build: %s %s\n' % (d.get('build'),
d.get('schannel') or d.get('channel'))
except BaseException as e:
if not compact:
body += '\nLicense Information:\n'
body += 'Open-Source Build\n'
if not compact:
body += '\nOperating System:\n'
body += platform.platform() + '\n'
if platform.system() == 'Linux':
body += platform.version() + '\n'
if not compact:
body += '\nOpenGL Driver:\n'
renderer = cmd.get_renderer()
body += str(renderer[0] or '(none)') + '\n'
body += str(renderer[1] or '(none)') + '\n'
body += str(renderer[2] or '(none)') + '\n'
from pymol.Qt import QtCore
body += '%s %s (Qt %s)\n' % (
except Exception as e:
body += '(%s)\n' % (e,)
if not compact:
body += '\nPython:\n'
body += '%s\n' % sys.version
body += 'prefix=%s\n' % _unicode(sys.prefix)
body += 'executable=%s\n' % _unicode(sys.executable)
body += u'filesystemencoding={}\n'.format(sys.getfilesystemencoding())
body += '\nStartup Scripts:\n'
pymolrc = invocation.get_user_config()
if pymolrc:
pymolrc = map(_unicode, pymolrc)
body += '\n'.join(pymolrc) + '\n'
body += '(no pymolrc file found)\n'
body += '\nQt, Python and PyMOL Environment Variables:\n'
for key in sorted(os.environ):
if re.search(r'^PY|QT|^LANG', key) and not (key == 'PYMOL_SCRIPTS'):
body += u'%s=%s\n' % (key, _unicode(os.environ[key]))
body += '\nPATH:\n'
body += textwrap.fill(_unicode(os.getenv('PATH', '')), 78) + '\n'
body += '\nDiagnostics collected on %s %s\n' % (time.ctime(), TZ)
if filename:
filename = cmd.exp_path(filename)
if not filename.endswith('.txt'):
raise CmdException('filename must have .txt extension')
with open(filename, 'w') as handle:
print('Diagnostics written to "%s"' % filename)
elif not quiet:
return body
 End of changes. 2 change blocks. 
0 lines changed or deleted 11 lines changed or added

Home  |  About  |  Features  |  All  |  Newest  |  Dox  |  Diffs  |  RSS Feeds  |  Screenshots  |  Comments  |  Imprint  |  Privacy  |  HTTP(S)