"Fossies" - the Fresh Open Source Software Archive  

Source code changes of the file "modules/pymol/creating.py" between
pymol-open-source-2.2.0.tar.gz and pymol-open-source-2.3.0.tar.gz

About: PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.

creating.py  (pymol-open-source-2.2.0)	:	creating.py  (pymol-open-source-2.3.0)
skipping to change at line 17		skipping to change at line 17
#G* Please see the accompanying LICENSE file for further information.		#G* Please see the accompanying LICENSE file for further information.
#H* -------------------------------------------------------------------		#H* -------------------------------------------------------------------
#I* Additional authors of this source file include:		#I* Additional authors of this source file include:
#-* Filipe Maia (slicing code)		#-* Filipe Maia (slicing code)
#-*		#-*
#-*		#-*
#Z* -------------------------------------------------------------------		#Z* -------------------------------------------------------------------
from __future__ import print_function, absolute_import		from __future__ import print_function, absolute_import
if __name__=='pymol.creating':		if True:
import pymol		import pymol
from . import selector		from . import selector
import traceback		import traceback
cmd = __import__("sys").modules["pymol.cmd"]		cmd = __import__("sys").modules["pymol.cmd"]
import re		import re
import gzip		import gzip
import os		import os
from .cmd import _cmd, Shortcut, is_list, is_string, \		from .cmd import _cmd, Shortcut, is_list, is_string, \
safe_list_eval, safe_alpha_list_eval, \		safe_list_eval, safe_alpha_list_eval, \
skipping to change at line 662		skipping to change at line 662
_self.unlock(r,_self)		_self.unlock(r,_self)
if _self._raising(r,_self): raise pymol.CmdException		if _self._raising(r,_self): raise pymol.CmdException
if ramp:		if ramp:
_self.volume_color(name, ramp)		_self.volume_color(name, ramp)
# unlock and then use this to differentiate our viz		# unlock and then use this to differentiate our viz
return r		return r
		def set_raw_alignment(name, raw, guide='', state=1, quiet=1, _self=cmd):
		'''
		DESCRIPTION
		API only. Create an alignment object from lists of indices.
		ARGUMENTS
		name = str: alignment object name
		raw = list: list (columns) of lists with (model, index) tuples
		guide = str: name of guide object
		state = int: object state
		EXAMPLE
		cmd.align('1t46', '1oky', object='aln')
		raw = cmd.get_raw_alignment('aln')
		cmd.delete('aln')
		cmd.set_raw_alignment('alnnew', raw)
		SEE ALSO
		cmd.get_raw_alignment
		'''
		with _self.lockcm:
		return _cmd.set_raw_alignment(name, raw, guide,
		int(state) - 1, int(quiet), _self._COb)
def slice_new(name, map, state=1, source_state=0, _self=cmd):		def slice_new(name, map, state=1, source_state=0, _self=cmd):
'''		'''
DESCRIPTION		DESCRIPTION
"slice_map" creates a slice object from a map object.		"slice_map" creates a slice object from a map object.
USAGE		USAGE
slice_map name, map, [opacity, [resolution, [state, [source_state]]]]		slice_map name, map, [opacity, [resolution, [state, [source_state]]]]
End of changes. 2 change blocks.
1 lines changed or deleted		32 lines changed or added

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