is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.
| INSTALL (pymol-open-source-2.2.0) | : | INSTALL (pymol-open-source-2.3.0) |
|---|
| | |
| skipping to change at line 13 | | skipping to change at line 13 |
|---|
| INSTALLATION VIA COMPILATION | | INSTALLATION VIA COMPILATION |
| ---------------------------------------------------------------------- | | ---------------------------------------------------------------------- |
| | |
| See also: http://pymolwiki.org/index.php/Linux_Install | | See also: http://pymolwiki.org/index.php/Linux_Install |
| | |
| REQUIREMENTS | | REQUIREMENTS |
| | |
| - C++11 compiler (e.g. gcc 4.7+) | | - C++11 compiler (e.g. gcc 4.7+) |
| - Python 2.7+ | | - Python 2.7+ |
| - Pmw (Python Megawidgets) (optional, for legacy GUI/plugins) | | - Pmw (Python Megawidgets) (optional, for legacy GUI/plugins) |
|
| | https://github.com/schrodinger/pmw-patched |
| - OpenGL | | - OpenGL |
| - GLEW | | - GLEW |
| - GLUT (freeglut) (optional, disable with --no-glut) | | - GLUT (freeglut) (optional, disable with --no-glut) |
| - libpng | | - libpng |
| - freetype | | - freetype |
| - libxml2 (optional, for COLLADA export, disable with --no-libxml) | | - libxml2 (optional, for COLLADA export, disable with --no-libxml) |
|
| - msgpack-c 1.0+ (optional, for fast MMTF loading, disable with | | - msgpack-c 2.1.5+ (optional, for fast MMTF loading and export, |
| --use-msgpackc=no) | | disable with --use-msgpackc=no) |
| | - mmtf-cpp (for fast MMTF export, disable with --use-msgpackc=no) |
| - PyQt5, PyQt4, or PySide (optional, will fall back to Tk interface) | | - PyQt5, PyQt4, or PySide (optional, will fall back to Tk interface) |
|
| - simplemmtf (optional, for MMTF export) | | |
| - glm | | - glm |
|
| | - catch2 (optional, enable with --testing) |
| | |
| SETUP OPTIONS | | SETUP OPTIONS |
| | |
| python setup.py --help | | python setup.py --help |
| python setup.py --help-distutils | | python setup.py --help-distutils |
| python setup.py --help-distutils install | | python setup.py --help-distutils install |
| | |
| Special install options: | | Special install options: |
| --pymol-path= installation directory for PyMOL data ($PYMOL_PATH) | | --pymol-path= installation directory for PyMOL data ($PYMOL_PATH) |
|
| --bundled-pmw install bundled Pmw module | | |
| --no-launcher skip installation of the pymol launcher | | --no-launcher skip installation of the pymol launcher |
| | |
| Environment variables: | | Environment variables: |
| PREFIX_PATH Colon-delimited list of paths to search for headers and | | PREFIX_PATH Colon-delimited list of paths to search for headers and |
|
| libraries, e.g. /opt/local:/opt/X11 | | libraries, e.g. $HOME/mmtf-cpp:$HOME/msgpack-c:/opt/local |
| CXX C++ compiler command | | CXX C++ compiler command |
| CC C compiler command | | CC C compiler command |
| CXXFLAGS C++ compiler flags | | CXXFLAGS C++ compiler flags |
| CFLAGS C compiler and linker flags | | CFLAGS C compiler and linker flags |
| CPPFLAGS C/C++ preprocessor flags, e.g. -I/tmp/msgpack-c/include | | CPPFLAGS C/C++ preprocessor flags, e.g. -I/tmp/msgpack-c/include |
| LDFLAGS linker flags | | LDFLAGS linker flags |
| | |
| INSTALLATION | | INSTALLATION |
| | |
| python setup.py install --prefix=~/someplace | | python setup.py install --prefix=~/someplace |
| | | |
| End of changes. 6 change blocks. |
|---|
| 5 lines changed or deleted | | 6 lines changed or added |
|---|
"Fossies" - the Fresh Open Source Software Archive 