"Fossies" - the Fresh Open Source Software Archive  

Source code changes report for "PyMOL" between the packages
pymol-open-source-2.2.0.tar.gz and pymol-open-source-2.3.0.tar.gz

About: PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source version.

[ Fossies home | Fossies main Diffs page | PyMOL Diffs folder ]

Summary:

The "PyMOL" source code changed by about 0.9% and now consists of 1278 regular files (+9) and 110 directories (+2).

Related Informations:

See ChangeLog (pymol 2.3.0).

Changes In Files (According File Type):

File TypeTotalAddedRemovedChanged
Header file 242 5 2 59
C program 76 0 0 2
C++ program 188 5 2 96
Patch 1 0 0 0
Python program 311 1 1 54
Shell program 2 0 0 0
JavaScript file 18 0 0 0
Makefile 1 0 0 0
Git file 1 0 0 0
HTML page 26 0 0 0
Log file 69 0 0 0
Parameter file 1 0 0 0
Qt UI file 16 1 0 1
TeX document 1 0 0 0
Data file 132 0 0 0
Image file 21 3 0 0
Vector Image file 2 0 0 0
X Pixmap file 10 0 0 0
Directory 110 2 0 0
Archive 9 0 1 0
Change log 1 0 0 1
Information file 4 0 0 1
License 4 0 0 0
Readme file 8 0 0 0
Text file 139 0 0 0
Other 1 0 0 0
Total Files1394176214


Header Files (66 of 242):

NameStatusDeltaVisual Diff
contrib/champ/const.h changed 38.1% diff
contrib/champ/os_memory.h changed 0.9% diff
layer0/Base.h changed 3.7% diff
layer0/Block.h changed 68.7% diff
layer0/Deferred.h changed 25.1% diff
layer0/Field.h changed 1.8% diff
layer0/GenericBuffer.h changed 2.4% diff
layer0/GraphicsUtil.h changed 86.0% diff
layer0/LangUtil.h added
layer0/Lex.h changed 9.6% diff
layer0/MemoryCache.h changed 48.2% diff
layer0/MemoryDebug.h changed 51.8% diff
layer0/MyPNG.h changed 31.9% diff
layer0/os_gl.h changed 0.2% diff
layer0/PyMOLGlobals.h changed 4.3% diff
layer0/Queue.h removed
layer0/unique_vla_ptr.h removed
layer0/Util.h changed 2.4% diff
layer0/Version.h changed 13.0% diff
layer0/vla.h added
layer0/Word.h changed 7.3% diff
layer1/ButMode.h changed 1.5% diff
layer1/CGO.h changed 4.5% diff
layer1/Color.h changed 12.0% diff
layer1/Extrude.h changed 7.3% diff
layer1/Image.h added
layer1/Movie.h changed 5.2% diff
layer1/Ortho.h changed 19.6% diff
layer1/P.h changed 2.2% diff
layer1/PConv.h changed 0.2% diff
layer1/PyMOLObject.h changed 8.5% diff
layer1/Ray.h changed 17.2% diff
layer1/Scene.h changed 9.3% diff
layer1/SceneDef.h changed 23.3% diff
layer1/SceneRender.h changed 6.5% diff
layer1/ScrollBar.h changed 79.3% diff
layer1/Seq.h changed 4.1% diff
layer1/SettingInfo.h changed 0.5% diff
layer1/View.h changed 5.7% diff
layer2/AssemblyHelpers.h changed 11.4% diff
layer2/AtomInfo.h changed 1.7% diff
layer2/AtomInfoHistory.h changed 3.6% diff
layer2/CifBondDict.h changed 7.7% diff
layer2/ObjectGadget.h changed 13.8% diff
layer2/ObjectGroup.h changed 3.6% diff
layer2/ObjectMap.h changed 3.3% diff
layer2/ObjectMolecule.h changed 4.4% diff
layer2/ObjectSlice.h changed 10.6% diff
layer2/RepCartoon.h changed 3.4% diff
layer2/RepDot.h changed 1.9% diff
layer2/RepEllipsoid.h changed 3.6% diff
layer2/RepMesh.h changed 2.7% diff
layer2/RepNonbondedSphere.h changed 4.2% diff
layer2/RepRibbon.h changed 3.1% diff
layer2/RepSphere.h changed 2.6% diff
layer3/Editor.h changed 1.1% diff
layer3/Executive.h changed 6.1% diff
layer3/Executive_pre.h changed 5.2% diff
layer3/MoleculeExporter.h changed 17.8% diff
layer3/Seeker.h changed 10.2% diff
layer3/Selector.h changed 2.1% diff
layer4/PopUp.h changed 5.7% diff
layer5/main.h changed 4.3% diff
layerCTest/Test.h added
layerCTest/TestCmdTest2.h added
modules/cealign/src/tnt/tnt_i_refvec.h changed 0.9% diff

C Programs (2 of 76):

NameStatusDeltaVisual Diff
contrib/champ/os_memory.c changed 2.0% diff
contrib/uiuc/plugins/molfile_plugin/src/corplugin.c changed 0.4% diff

C++ Programs (103 of 188):

NameStatusDeltaVisual Diff
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp changed 0.3% diff
layer0/Block.cpp changed 61.3% diff
layer0/Deferred.cpp changed 94.4% diff
layer0/Field.cpp changed 0.4% diff
layer0/File.cpp changed 3.5% diff
layer0/GenericBuffer.cpp changed 2.4% diff
layer0/GraphicsUtil.cpp changed 16.0% diff
layer0/Isosurf.cpp changed 0.2% diff
layer0/Map.cpp changed 0.7% diff
layer0/MemoryCache.cpp removed
layer0/MemoryDebug.cpp changed 67.2% diff
layer0/MyPNG.cpp changed 9.4% diff
layer0/os_gl.cpp changed 0.3% diff
layer0/Queue.cpp removed
layer0/ShaderMgr.cpp changed 5.9% diff
layer0/ShaderPrg.cpp changed 2.2% diff
layer0/Tetsurf.cpp changed 0.2% diff
layer0/Texture.cpp changed 0.1% diff
layer0/Util.cpp changed 1.0% diff
layer0/Vector.cpp changed 0.1% diff
layer1/ButMode.cpp changed 34.5% diff
layer1/CGO.cpp changed 3.2% diff
layer1/Color.cpp changed 1.7% diff
layer1/Control.cpp changed 11.5% diff
layer1/Extrude.cpp changed 3.2% diff
layer1/Movie.cpp changed 12.0% diff
layer1/Ortho.cpp changed 8.7% diff
layer1/P.cpp changed 2.0% diff
layer1/PConv.cpp changed 1.2% diff
layer1/Pop.cpp changed 28.9% diff
layer1/PyMOLObject.cpp changed 0.8% diff
layer1/Ray.cpp changed 1.0% diff
layer1/Rep.cpp changed 4.7% diff
layer1/Scene.cpp changed 8.1% diff
layer1/ScenePicking.cpp changed 7.0% diff
layer1/SceneRay.cpp changed 13.6% diff
layer1/SceneRender.cpp changed 2.2% diff
layer1/ScrollBar.cpp changed 61.7% diff
layer1/Seq.cpp changed 14.9% diff
layer1/Setting.cpp changed 0.8% diff
layer1/Wizard.cpp changed 10.2% diff
layer2/AssemblyHelpers.cpp changed 2.9% diff
layer2/AtomInfo.cpp changed 0.9% diff
layer2/AtomInfoHistory.cpp changed 0.7% diff
layer2/BondTypeHistory.cpp changed 0.9% diff
layer2/CifFile.cpp changed 7.8% diff
layer2/CifMoleculeReader.cpp changed 11.5% diff
layer2/CoordSet.cpp changed 1.3% diff
layer2/DistSet.cpp changed 0.3% diff
layer2/GadgetSet.cpp changed 2.2% diff
layer2/HydrogenAdder.cpp changed 1.7% diff
layer2/MmtfMoleculeReader.cpp changed 3.2% diff
layer2/MolV3000.cpp changed 1.5% diff
layer2/ObjectAlignment.cpp changed 4.1% diff
layer2/ObjectCallback.cpp changed 0.8% diff
layer2/ObjectCGO.cpp changed 1.9% diff
layer2/ObjectDist.cpp changed 6.4% diff
layer2/ObjectGadget.cpp changed 0.4% diff
layer2/ObjectMap.cpp changed 0.4% diff
layer2/ObjectMesh.cpp changed 0.8% diff
layer2/ObjectMolecule.cpp changed 3.0% diff
layer2/ObjectMolecule2.cpp changed 1.2% diff
layer2/ObjectSlice.cpp changed 0.9% diff
layer2/ObjectSurface.cpp changed 0.6% diff
layer2/ObjectVolume.cpp changed 0.6% diff
layer2/RepAngle.cpp changed 0.5% diff
layer2/RepCartoon.cpp changed 4.7% diff
layer2/RepCylBond.cpp changed 0.1% diff
layer2/RepDihedral.cpp changed 0.5% diff
layer2/RepDistDash.cpp changed 0.6% diff
layer2/RepDistLabel.cpp changed 1.1% diff
layer2/RepDot.cpp changed 0.6% diff
layer2/RepEllipsoid.cpp changed 0.7% diff
layer2/RepLabel.cpp changed 1.5% diff
layer2/RepMesh.cpp changed 1.0% diff
layer2/RepNonbonded.cpp changed 0.8% diff
layer2/RepNonbondedSphere.cpp changed 2.1% diff
layer2/RepRibbon.cpp changed 0.5% diff
layer2/RepSphere.cpp changed 0.7% diff
layer2/RepSphereGenerate.cpp changed 2.6% diff
layer2/RepSphereImmediate.cpp changed 0.1% diff
layer2/RepSurface.cpp changed 0.4% diff
layer2/RepWireBond.cpp changed 0.3% diff
layer3/AtomIterators.cpp changed 1.3% diff
layer3/CifDataValueFormatter.cpp changed 1.5% diff
layer3/Editor.cpp changed 0.4% diff
layer3/Executive.cpp changed 1.8% diff
layer3/MaeExportHelpers.cpp changed 0.8% diff
layer3/MoleculeExporter.cpp changed 19.3% diff
layer3/MovieScene.cpp changed 6.1% diff
layer3/PlugIOManager.cpp changed 6.6% diff
layer3/Seeker.cpp changed 7.7% diff
layer3/Selector.cpp changed 0.2% diff
layer4/Cmd.cpp changed 2.3% diff
layer4/Export.cpp changed 0.1% diff
layer4/PopUp.cpp changed 33.0% diff
layer5/main.cpp changed 1.7% diff
layer5/PyMOL.cpp changed 0.7% diff
layerCTest/Test.cpp added
layerCTest/Test_Classic_VLA.cpp added
layerCTest/Test_Image.cpp added
layerCTest/Test_Test.cpp added
layerCTest/Test_VLA.cpp added

Python Programs (56 of 311):

NameStatusDeltaVisual Diff
create_shadertext.py changed 1.5% diff
examples/devel/cgo06.py changed 0.8% diff
modules/chempy/__init__.py changed 9.4% diff
modules/chempy/hetatm.py changed 2.3% diff
modules/chempy/place.py changed 0.5% diff
modules/chempy/protein.py changed 1.0% diff
modules/pmg_qt/builder.py changed 1.4% diff
modules/pmg_qt/file_dialogs.py changed 9.3% diff
modules/pmg_qt/mimic_pmg_tk.py changed 19.6% diff
modules/pmg_qt/properties_dialog.py changed 1.1% diff
modules/pmg_qt/pymol_gl_widget.py changed 3.2% diff
modules/pmg_qt/pymol_qt_gui.py changed 0.7% diff
modules/pmg_qt/volume.py changed 0.5% diff
modules/pmg_tk/startup/remote_pdb_load.py removed
modules/pymol/__init__.py changed 0.7% diff
modules/pymol/_gui.py changed 0.6% diff
modules/pymol/api.py changed 0.7% diff
modules/pymol/cmd.py changed 2.3% diff
modules/pymol/commanding.py changed 0.2% diff
modules/pymol/completing.py changed 0.6% diff
modules/pymol/controlling.py changed 0.2% diff
modules/pymol/creating.py changed 1.9% diff
modules/pymol/diagnosing.py changed 100.0% diff
modules/pymol/editing.py changed 0.2% diff
modules/pymol/editor.py changed 0.4% diff
modules/pymol/experimenting.py changed 0.5% diff
modules/pymol/exporting.py changed 1.7% diff
modules/pymol/externing.py changed 0.8% diff
modules/pymol/fitting.py changed 1.0% diff
modules/pymol/gui.py changed 3.9% diff
modules/pymol/helping.py changed 0.1% diff
modules/pymol/importing.py changed 1.1% diff
modules/pymol/internal.py changed 2.4% diff
modules/pymol/invocation.py changed 0.7% diff
modules/pymol/lazyio.py changed 0.5% diff
modules/pymol/moving.py changed 0.1% diff
modules/pymol/parser.py changed 1.1% diff
modules/pymol/parsing.py changed 0.2% diff
modules/pymol/povray.py changed 2.1% diff
modules/pymol/preset.py changed 0.3% diff
modules/pymol/Qt/__init__.py changed 19.2% diff
modules/pymol/Qt/utils.py changed 2.2% diff
modules/pymol/querying.py changed 0.7% diff
modules/pymol/selecting.py changed 2.0% diff
modules/pymol/seqalign.py added
modules/pymol/setting.py changed 0.9% diff
modules/pymol/viewing.py changed 0.6% diff
modules/pymol/wizard/cleanup.py changed 3.2% diff
modules/pymol/wizard/pseudoatom.py changed 6.3% diff
modules/pymol/wizard/renaming.py changed 5.0% diff
modules/pymol/wizarding.py changed 0.5% diff
modules/pymol/xwin.py changed 60.9% diff
modules/pymol2/__init__.py changed 7.2% diff
modules/pymol2/cmd2.py changed 2.9% diff
monkeypatch_distutils.py changed 11.1% diff
setup.py changed 24.0% diff

Qt UI Files (2 of 16):

NameStatusDeltaVisual Diff
modules/pmg_qt/forms/load_aln.ui added
modules/pmg_qt/forms/load_mae.ui changed 19.7% diff

Image Files (3 of 21):

NameStatusDeltaVisual Diff
data/test/double.png added
data/test/single-right.png added
data/test/single.png added

Directories (2 of 110):

NameStatus
data/test added
layerCTest added

Archives (1 of 9):

NameStatusDeltaVisual Diff
modules/pmg_tk/pmw.tgz removed

Change Logs (all 1):

NameStatusDeltaVisual Diff
ChangeLog changed 0.1% diff

Information Files (1 of 4):

NameStatusDeltaVisual Diff
INSTALL changed 21.4% diff

Packages Compared:

pymol-open-source-2.2.0.tar.gz
pymol-open-source-2.3.0.tar.gz

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