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Source code changes report for "GROMACS" between the packages
gromacs-2016-rc1.tar.gz and gromacs-2016.tar.gz

About: GROMACS performs molecular dynamics, i.e. simulates the Newtonian equations of motion for systems with hundreds to millions of particles (designed for biochemical molecules but used also for e.g. polymers). GROMACS performs molecular dynamics, i.e. simulates the Newtonian equations of motion for systems with hundreds to millions of particles (designed for biochemical molecules but used also for e.g. polymers).

Summary:

The "GROMACS" source code changed by about 0.02% and now consists of 4879 files.

Related Informations:

None found by Fossies.

Changes In Files (According File Type):

File TypeTotalAddedRemovedChanged
Header file 851 0 0 8
C program 1408 0 0 0
C++ program 1038 0 0 14
Patch 2 0 0 0
Fortran program 3 0 0 0
Perl program 5 0 0 0
Python program 29 0 0 0
Shell program 14 0 0 0
Awk program 4 0 0 0
Python compiled program 1 0 0 0
Automake file 3 0 0 0
CMake file 182 0 0 5
Configuration file 1 0 0 0
Lex program 1 0 0 0
Makefile 2 0 0 0
Man page 96 0 0 96
XML document 302 0 0 0
Yacc program 1 0 0 0
BibTeX document 3 0 0 0
DOS Batch file 2 0 0 0
Doxygen file 8 0 0 0
DTD file 1 0 0 0
MS office document 15 0 0 0
PostScript file 63 0 0 0
RST file 32 0 0 0
TeX document 18 0 0 0
XML style sheet 9 0 0 0
YAML file 1 0 0 0
Data file 49 0 0 0
Image file 5 0 0 0
PDF file 6 0 0 0
Vector Image file 42 0 0 0
Directory 184 0 0 0
Information file 4 0 0 1
License 5 0 0 0
Readme file 15 1 1 1
Text file 454 0 0 1
Other 20 0 0 0
Total Files487911126



Header Files (8 of 851):

NameStatusDeltaVisual Diff
src/external/gmock-1.7.0/include/gmock/gmock-spec-builders.h changed 0.2% diff
src/gromacs/domdec/domdec_internal.h changed 4.2% diff
src/gromacs/fileio/tngio.h changed 2.2% diff
src/gromacs/fileio/trrio.h changed 37.0% diff
src/gromacs/fileio/xtcio.h changed 18.4% diff
src/gromacs/mdlib/integrator.h changed 2.4% diff
src/gromacs/trajectory/trajectoryframe.h changed 1.9% diff
src/programs/mdrun/resource-division.h changed 2.6% diff

C++ Programs (14 of 1038):

NameStatusDeltaVisual Diff
src/gromacs/fileio/enxio.cpp changed 0.6% diff
src/gromacs/fileio/g96io.cpp changed 1.1% diff
src/gromacs/fileio/tngio.cpp changed 0.1% diff
src/gromacs/fileio/trrio.cpp changed 15.3% diff
src/gromacs/fileio/xtcio.cpp changed 8.6% diff
src/gromacs/gpu_utils/ocl_caching.cpp changed 16.5% diff
src/gromacs/mdlib/md_support.cpp changed 1.1% diff
src/gromacs/mdlib/minimize.cpp changed 0.2% diff
src/gromacs/mdlib/tpi.cpp changed 0.2% diff
src/gromacs/tools/dump.cpp changed 2.2% diff
src/gromacs/utility/coolstuff.cpp changed 0.4% diff
src/programs/mdrun/md.cpp changed 0.7% diff
src/programs/mdrun/resource-division.cpp changed 7.6% diff
src/programs/mdrun/runner.cpp changed 1.7% diff

CMake Files (5 of 182):

NameStatusDeltaVisual Diff
cmake/gmxFindFlagsForSource.cmake changed 13.7% diff
cmake/gmxManageSimd.cmake changed 0.4% diff
cmake/gmxVersionInfo.cmake changed 0.7% diff
share/template/CMakeLists.txt changed 17.4% diff
src/external/gmock-1.7.0/CMakeLists.txt changed 5.0% diff

Man Pages (all 96):

NameStatusDeltaVisual Diff
docs/man/gmx-anadock.1 changed 6.4% diff
docs/man/gmx-anaeig.1 changed 1.5% diff
docs/man/gmx-analyze.1 changed 1.2% diff
docs/man/gmx-angle.1 changed 2.4% diff
docs/man/gmx-bar.1 changed 1.6% diff
docs/man/gmx-bundle.1 changed 3.1% diff
docs/man/gmx-check.1 changed 2.8% diff
docs/man/gmx-chi.1 changed 1.2% diff
docs/man/gmx-cluster.1 changed 1.3% diff
docs/man/gmx-clustsize.1 changed 2.6% diff
docs/man/gmx-confrms.1 changed 4.1% diff
docs/man/gmx-convert-tpr.1 changed 3.5% diff
docs/man/gmx-covar.1 changed 2.7% diff
docs/man/gmx-current.1 changed 2.0% diff
docs/man/gmx-density.1 changed 1.8% diff
docs/man/gmx-densmap.1 changed 2.5% diff
docs/man/gmx-densorder.1 changed 3.7% diff
docs/man/gmx-dielectric.1 changed 2.9% diff
docs/man/gmx-dipoles.1 changed 1.4% diff
docs/man/gmx-disre.1 changed 3.2% diff
docs/man/gmx-distance.1 changed 2.4% diff
docs/man/gmx-do_dssp.1 changed 2.5% diff
docs/man/gmx-dos.1 changed 2.8% diff
docs/man/gmx-dump.1 changed 5.2% diff
docs/man/gmx-dyecoupl.1 changed 3.6% diff
docs/man/gmx-dyndom.1 changed 4.1% diff
docs/man/gmx-editconf.1 changed 1.3% diff
docs/man/gmx-eneconv.1 changed 4.5% diff
docs/man/gmx-enemat.1 changed 2.7% diff
docs/man/gmx-energy.1 changed 1.0% diff
docs/man/gmx-filter.1 changed 3.5% diff
docs/man/gmx-freevolume.1 changed 2.6% diff
docs/man/gmx-gangle.1 changed 1.9% diff
docs/man/gmx-genconf.1 changed 4.9% diff
docs/man/gmx-genion.1 changed 3.4% diff
docs/man/gmx-genrestr.1 changed 2.8% diff
docs/man/gmx-grompp.1 changed 1.5% diff
docs/man/gmx-gyrate.1 changed 3.2% diff
docs/man/gmx-h2order.1 changed 4.2% diff
docs/man/gmx-hbond.1 changed 1.3% diff
docs/man/gmx-helix.1 changed 3.2% diff
docs/man/gmx-helixorient.1 changed 3.2% diff
docs/man/gmx-help.1 changed 26.4% diff
docs/man/gmx-hydorder.1 changed 4.0% diff
docs/man/gmx-insert-molecules.1 changed 2.2% diff
docs/man/gmx-lie.1 changed 4.8% diff
docs/man/gmx-make_edi.1 changed 1.0% diff
docs/man/gmx-make_ndx.1 changed 4.8% diff
docs/man/gmx-mdmat.1 changed 4.7% diff
docs/man/gmx-mdrun.1 changed 0.7% diff
docs/man/gmx-mindist.1 changed 2.8% diff
docs/man/gmx-mk_angndx.1 changed 8.6% diff
docs/man/gmx-morph.1 changed 4.0% diff
docs/man/gmx-msd.1 changed 2.2% diff
docs/man/gmx-nmeig.1 changed 2.7% diff
docs/man/gmx-nmens.1 changed 5.2% diff
docs/man/gmx-nmtraj.1 changed 4.1% diff
docs/man/gmx-order.1 changed 2.7% diff
docs/man/gmx-pairdist.1 changed 2.1% diff
docs/man/gmx-pdb2gmx.1 changed 1.0% diff
docs/man/gmx-pme_error.1 changed 5.4% diff
docs/man/gmx-polystat.1 changed 3.3% diff
docs/man/gmx-potential.1 changed 3.5% diff
docs/man/gmx-principal.1 changed 4.8% diff
docs/man/gmx-rama.1 changed 7.3% diff
docs/man/gmx-rdf.1 changed 1.9% diff
docs/man/gmx-rms.1 changed 2.0% diff
docs/man/gmx-rmsdist.1 changed 2.9% diff
docs/man/gmx-rmsf.1 changed 3.0% diff
docs/man/gmx-rotacf.1 changed 3.3% diff
docs/man/gmx-rotmat.1 changed 3.7% diff
docs/man/gmx-saltbr.1 changed 6.1% diff
docs/man/gmx-sans.1 changed 3.1% diff
docs/man/gmx-sasa.1 changed 2.1% diff
docs/man/gmx-saxs.1 changed 5.7% diff
docs/man/gmx-select.1 changed 1.5% diff
docs/man/gmx-sham.1 changed 1.8% diff
docs/man/gmx-sigeps.1 changed 5.9% diff
docs/man/gmx-solvate.1 changed 2.4% diff
docs/man/gmx-sorient.1 changed 3.0% diff
docs/man/gmx-spatial.1 changed 2.3% diff
docs/man/gmx-spol.1 changed 3.6% diff
docs/man/gmx-tcaf.1 changed 2.3% diff
docs/man/gmx-traj.1 changed 2.1% diff
docs/man/gmx-trjcat.1 changed 3.2% diff
docs/man/gmx-trjconv.1 changed 0.9% diff
docs/man/gmx-trjorder.1 changed 3.3% diff
docs/man/gmx-tune_pme.1 changed 0.8% diff
docs/man/gmx-vanhove.1 changed 2.7% diff
docs/man/gmx-velacc.1 changed 3.5% diff
docs/man/gmx-view.1 changed 5.5% diff
docs/man/gmx-wham.1 changed 0.9% diff
docs/man/gmx-wheel.1 changed 8.0% diff
docs/man/gmx-x2top.1 changed 2.9% diff
docs/man/gmx-xpm2ps.1 changed 2.1% diff
docs/man/gmx.1 changed 1.0% diff

Information Files (1 of 4):

NameStatusDeltaVisual Diff
INSTALL changed 1.0% diff

Readme Files (3 of 15):

NameStatusDeltaVisual Diff
share/template/README renamed 25.7% diff
share/template/README.cmakein
src/external/gmock-1.7.0/README.Gromacs changed 15.1% diff

Text Files (1 of 454):

NameStatusDeltaVisual Diff
share/top/oplsaa.ff/aminoacids.rtp changed 1.4% diff

Packages Compared:

gromacs-2016-rc1.tar.gz
gromacs-2016.tar.gz


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