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Source code changes of the file "include/codonMSA.hh" between
augustus-3.3.2.tar.gz and augustus-3.3.3.tar.gz

About: AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences.

codonMSA.hh  (augustus-3.3.2):codonMSA.hh  (augustus-3.3.3)
/********************************************************************** /*
* file: codonMSA.hh * codonMSA.hh
* licence: Artistic Licence, see file LICENCE.TXT or
* http://www.opensource.org/licenses/artistic-license.php
* descr.: datastructure for the codon alignment
* author: Lizzy Gerischer
* *
* date | author | changes * License: Artistic License, see file LICENSE.TXT or
* --------|--------------------|------------------------------------------ * https://opensource.org/licenses/artistic-license-1.0
* 14.07.16| Lizzy Gerischer | creation of the file */
**********************************************************************/
#ifndef _CODONMSA #ifndef _CODONMSA
#define _CODONMSA #define _CODONMSA
#include <fstream> #include <fstream>
#include "properties.hh" #include "properties.hh"
#include "phylotree.hh" #include "phylotree.hh"
#include "contTimeMC.hh" #include "contTimeMC.hh"
/**
* @brief datastructure for the codon alignment
*
* @author Lizzy Gerischer
*/
class CodonMSA{ class CodonMSA{
public: public:
CodonMSA(string filename, double branchlength); CodonMSA(string filename, double branchlength);
~CodonMSA(){ ~CodonMSA(){
delete ctree; delete ctree;
} }
void readAlignment(string filename); void readAlignment(string filename);
void printOmegaStats(); void printOmegaStats();
 End of changes. 3 change blocks. 
10 lines changed or deleted 10 lines changed or added

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