"Fossies" - the Fresh Open Source Software Archive  

Source code changes of the file "config/species/toxoplasma/toxoplasma_trans_shadow_partial_utr.pbl" between
augustus-3.3.2.tar.gz and augustus-3.3.3.tar.gz

About: AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences.

toxoplasma_trans_shadow_partial_utr.pbl  (augustus-3.3.2):toxoplasma_trans_shadow_partial_utr.pbl  (augustus-3.3.3)
skipping to change at line 92 skipping to change at line 92
64 .001 # reverse 5' UTR terminal exon 64 .001 # reverse 5' UTR terminal exon
65 .024 # reverse 3' UTR single exon 65 .024 # reverse 3' UTR single exon
66 .000 # reverse 3' UTR initial exon 66 .000 # reverse 3' UTR initial exon
67 .000 # reverse 3' UTR intron single base 67 .000 # reverse 3' UTR intron single base
68 .0 # reverse 3' UTR intron variable length 68 .0 # reverse 3' UTR intron variable length
69 .000 # reverse 3' UTR internal exon 69 .000 # reverse 3' UTR internal exon
70 .000 # reverse 3' UTR terminal exon 70 .000 # reverse 3' UTR terminal exon
# Terminal probabilities (a priori probs for a state ending at # Terminal probabilities (a priori probs for a state ending at
# the last position. # the last position.
# only non-zero probabilities neccessary # only non-zero probabilities necessary
[Terminal] [Terminal]
# number of states where terminating is possible # number of states where terminating is possible
71 71
# state prob statename # state prob statename
0 .76 # start intergenic region 0 .76 # start intergenic region
1 .003 # single Exon 1 .003 # single Exon
2 .001 # initial Exon win 0 2 .001 # initial Exon win 0
3 .001 # initial Exon win 1 3 .001 # initial Exon win 1
4 .001 # initial Exon win 2 4 .001 # initial Exon win 2
5 .001 # internal Exon win 0 5 .001 # internal Exon win 0
 End of changes. 1 change blocks. 
1 lines changed or deleted 1 lines changed or added

Home  |  About  |  Features  |  All  |  Newest  |  Dox  |  Diffs  |  RSS Feeds  |  Screenshots  |  Comments  |  Imprint  |  Privacy  |  HTTP(S)