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Source code changes of the file "auxprogs/bam2wig/Makefile" between
augustus-3.3.2.tar.gz and augustus-3.3.3.tar.gz

About: AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences.

Makefile  (augustus-3.3.2):Makefile  (augustus-3.3.3)
# Makefile of bam2wig # Makefile of bam2wig
# #
# NOTE: Modify the variable TOOLDIR according to where your samtools/htslib/bcft ools/tabix software has been installed # NOTE: Modify the variable TOOLDIR according to where your samtools/htslib/bcft ools software has been installed
# #
# Created: 12-June-2012 # License: Artistic License, see file LICENSE.TXT or
# Last modified: 10-NOV-2017 # https://opensource.org/licenses/artistic-license-1.0
# #
ifndef TOOLDIR ifndef TOOLDIR
TOOLDIR=$(HOME)/tools TOOLDIR=$(HOME)/tools
# replace with your own parent directory of samtools, htslib, bcftools, tabix # replace with your own parent directory of samtools, htslib, bcftools
# if TOOLDIR is not specified as environment variable # if TOOLDIR is not specified as environment variable
endif endif
PROGRAM = bam2wig PROGRAM = bam2wig
SOURCES = $(PROGRAM) SOURCES = $(PROGRAM)
OBJECTS = $(SOURCES:.c=.o) OBJECTS = $(SOURCES:.c=.o)
SAMTOOLS=$(TOOLDIR)/samtools/ SAMTOOLS=$(TOOLDIR)/samtools
HTSLIB=$(TOOLDIR)/htslib/ HTSLIB=$(TOOLDIR)/htslib
BCFTOOLS=$(TOOLDIR)/bcftools/ BCFTOOLS=$(TOOLDIR)/bcftools
TABIX=$(TOOLDIR)/tabix/ INCLUDES=-I$(SAMTOOLS) -I. -I$(HTSLIB) -I$(BCFTOOLS)
INCLUDES=-I$(SAMTOOLS) -I. -I$(HTSLIB) -I$(BCFTOOLS) -I$(TABIX)
VPATH=$(SAMTOOLS) VPATH=$(SAMTOOLS)
LIBS=$(SAMTOOLS)/libbam.a $(HTSLIB)/libhts.a -lcurses -lm -lz -lpthread -lcurl - lssl -lcrypto LIBS=$(SAMTOOLS)/libbam.a $(HTSLIB)/libhts.a -lcurses -lm -lz -lpthread -lcurl - lssl -lcrypto
CFLAGS=-Wall -O2 $(INCLUDES) CFLAGS=-Wall -O2 $(INCLUDES)
CC=gcc CC=gcc
$(PROGRAM) : bam2wig.o $(PROGRAM) : bam2wig.o
$(CC) $(CFLAGS) $^ -o $@ $(LIBS) -lbz2 -llzma $(CC) $(CFLAGS) $^ -o $@ $(LIBS) -lbz2 -llzma
mkdir -p ../../bin
cp bam2wig ../../bin/bam2wig cp bam2wig ../../bin/bam2wig
bam2wig.o : bam2wig.c bam2wig.o : bam2wig.c
$(CC) $(CFLAGS) -c $^ -o $@ $(CC) $(CFLAGS) -c $^ -o $@
clean: clean:
rm -f $(OBJECTS) bam2wig.o rm -f $(OBJECTS) bam2wig.o
rm -f ../../bin/bam2wig rm -f ../../bin/bam2wig
 End of changes. 5 change blocks. 
9 lines changed or deleted 9 lines changed or added

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