"Fossies" - the Fresh Open Source Software Archive  

Source code changes report for "AUGUSTUS" between the packages
augustus-3.2.1.tar.gz and augustus-3.2.2.tar.gz

About: AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences.

Summary:

The "AUGUSTUS" source code changed by about 100.0% and now consists of 2773 files.

Related Informations:

See HISTORY.TXT (augustus 3.2.2).

Changes In Files (According File Type):

File TypeTotalAddedRemovedChanged
Header file 126 63 63 0
C program 14 7 7 0
C++ program 163 82 81 0
Fortran program 227 109 118 0
Perl module 4 2 2 0
Perl program 160 80 80 0
Shell program 6 3 3 0
Configuration file 515 249 266 0
Executable file 27 15 12 0
JavaScript file 4 2 2 0
Makefile 31 16 15 0
Symbolic link 2 1 1 0
Berkeley database 1 0 1 0
Compiled object 23 20 3 0
CSS style sheet 4 2 2 0
Data List 4 2 2 0
HTML page 32 16 16 0
MS office document 2 1 1 0
Options file 2 1 1 0
YAML file 2 1 1 0
Audio file 4 2 2 0
Data file 7 3 4 0
Image file 4 2 2 0
PDF file 6 3 3 0
Vector Image file 2 1 1 0
Directory 290 141 149 0
Archive 26 13 13 0
Information file 4 2 2 0
License 4 2 2 0
Readme file 45 22 23 0
Text file 1032 501 531 0
Total Files2773136414090



Header Files (all 126):

NameStatusDeltaVisual Diff
augustus-3.2.1/auxprogs/compileSpliceCands/list.h moved 0.0%
auxprogs/compileSpliceCands/list.h
augustus-3.2.1/auxprogs/filterBam/src/bamtools/bamtools_sort.h moved 0.0%
auxprogs/filterBam/src/bamtools/bamtools_sort.h
augustus-3.2.1/auxprogs/filterBam/src/bamtools/bamtools_tool.h moved 0.0%
auxprogs/filterBam/src/bamtools/bamtools_tool.h
augustus-3.2.1/auxprogs/filterBam/src/headers/filterBam.h moved 0.0%
auxprogs/filterBam/src/headers/filterBam.h
augustus-3.2.1/auxprogs/homGeneMapping/include/bitmasking.hh moved 0.0%
auxprogs/homGeneMapping/include/bitmasking.hh
augustus-3.2.1/auxprogs/homGeneMapping/include/gene.hh moved 1.6% diff
auxprogs/homGeneMapping/include/gene.hh
augustus-3.2.1/auxprogs/homGeneMapping/include/genome.hh moved 0.0%
auxprogs/homGeneMapping/include/genome.hh
augustus-3.2.1/auxprogs/homGeneMapping/include/projectio.hh moved 0.0%
auxprogs/homGeneMapping/include/projectio.hh
augustus-3.2.1/auxprogs/joingenes/jg_ios.h moved 12.3% diff
auxprogs/joingenes/jg_ios.h
augustus-3.2.1/auxprogs/joingenes/jg_transcript.h moved 12.7% diff
auxprogs/joingenes/jg_transcript.h
augustus-3.2.1/include/alignment.hh moved 0.0%
include/alignment.hh
augustus-3.2.1/include/baumwelch.hh moved 0.0%
include/baumwelch.hh
augustus-3.2.1/include/commontrain.hh moved 0.0%
include/commontrain.hh
augustus-3.2.1/include/compgenepred.hh moved 0.0%
include/compgenepred.hh
augustus-3.2.1/include/consensus.hh moved 0.0%
include/consensus.hh
augustus-3.2.1/include/contentmodel.hh moved 0.0%
include/contentmodel.hh
augustus-3.2.1/include/contTimeMC.hh moved 17.4% diff
include/contTimeMC.hh
augustus-3.2.1/include/evaluation.hh moved 0.0%
include/evaluation.hh
augustus-3.2.1/include/exon_seg.hh moved 0.0%
include/exon_seg.hh
augustus-3.2.1/include/exoncand.hh moved 12.5% diff
include/exoncand.hh
augustus-3.2.1/include/exonmodel.hh moved 0.0%
include/exonmodel.hh
augustus-3.2.1/include/extrinsicinfo.hh moved 0.0%
include/extrinsicinfo.hh
augustus-3.2.1/include/fasta.hh moved 0.0%
include/fasta.hh
augustus-3.2.1/include/genbank.hh moved 0.0%
include/genbank.hh
augustus-3.2.1/include/gene.hh moved 0.5% diff
include/gene.hh
augustus-3.2.1/include/geneMSA.hh moved 28.4% diff
include/geneMSA.hh
augustus-3.2.1/include/geneticcode.hh moved 0.0%
include/geneticcode.hh
augustus-3.2.1/include/genomicMSA.hh moved 0.0%
include/genomicMSA.hh
augustus-3.2.1/include/graph.hh moved 1.9% diff
include/graph.hh
augustus-3.2.1/include/hints.hh moved 0.0%
include/hints.hh
augustus-3.2.1/include/igenicmodel.hh moved 0.0%
include/igenicmodel.hh
augustus-3.2.1/include/intronmodel.hh moved 0.0%
include/intronmodel.hh
augustus-3.2.1/include/liftover.hh moved 18.3% diff
include/liftover.hh
augustus-3.2.1/include/lldouble.hh moved 0.0%
include/lldouble.hh
augustus-3.2.1/include/matrix.hh moved 0.0%
include/matrix.hh
augustus-3.2.1/include/mea.hh moved 0.0%
include/mea.hh
augustus-3.2.1/include/meaPath.hh moved 0.0%
include/meaPath.hh
augustus-3.2.1/include/merkmal.hh moved 0.0%
include/merkmal.hh
augustus-3.2.1/include/motif.hh moved 0.0%
include/motif.hh
augustus-3.2.1/include/namgene.hh moved 0.0%
include/namgene.hh
augustus-3.2.1/include/ncmodel.hh moved 0.0%
include/ncmodel.hh
augustus-3.2.1/include/orthoexon.hh moved 40.3% diff
include/orthoexon.hh
augustus-3.2.1/include/orthogene.hh moved 0.0%
include/orthogene.hh
augustus-3.2.1/include/orthograph.hh moved 11.2% diff
include/orthograph.hh
augustus-3.2.1/include/phylotree.hh moved 4.4% diff
include/phylotree.hh
augustus-3.2.1/include/pp_fastBlockSearcher.hh moved 0.0%
include/pp_fastBlockSearcher.hh
augustus-3.2.1/include/pp_hitseq.hh moved 0.0%
include/pp_hitseq.hh
augustus-3.2.1/include/pp_profile.hh moved 0.0%
include/pp_profile.hh
augustus-3.2.1/include/pp_scoring.hh moved 0.0%
include/pp_scoring.hh
augustus-3.2.1/include/projectio.hh moved 0.0%
include/projectio.hh
augustus-3.2.1/include/properties.hh moved 1.1% diff
include/properties.hh
augustus-3.2.1/include/randseqaccess.hh moved 0.0%
include/randseqaccess.hh
augustus-3.2.1/include/speciesgraph.hh moved 1.0% diff
include/speciesgraph.hh
augustus-3.2.1/include/sqliteDB.hh moved 0.0%
include/sqliteDB.hh
augustus-3.2.1/include/statemodel.hh moved 1.2% diff
include/statemodel.hh
augustus-3.2.1/include/table_structure.h moved 0.0%
include/table_structure.h
augustus-3.2.1/include/types.hh moved 0.5% diff
include/types.hh
augustus-3.2.1/include/utrmodel.hh moved 0.0%
include/utrmodel.hh
augustus-3.2.1/include/vitmatrix.hh moved 0.0%
include/vitmatrix.hh
augustus-3.2.1/src/parser/parser.h moved 0.0%
src/parser/parser.h
augustus-3.2.1/src/parser/parserbase.h moved 0.0%
src/parser/parserbase.h
augustus-3.2.1/src/scanner/scanner.h moved 0.0%
src/scanner/scanner.h
augustus-3.2.1/src/scanner/scannerbase.h moved 0.0%
src/scanner/scannerbase.h

C Programs (all 14):

NameStatusDeltaVisual Diff
augustus-3.2.1/auxprogs/aln2wig/aln2wig.c moved 0.0%
auxprogs/aln2wig/aln2wig.c
augustus-3.2.1/auxprogs/bam2wig/bam2wig.c moved 0.0%
auxprogs/bam2wig/bam2wig.c
augustus-3.2.1/auxprogs/checkTargetSortedness/checkTargetSortedness.c moved 3.7% diff
auxprogs/checkTargetSortedness/checkTargetSortedness.c
augustus-3.2.1/auxprogs/compileSpliceCands/compileSpliceCands.c moved 0.0%
auxprogs/compileSpliceCands/compileSpliceCands.c
augustus-3.2.1/auxprogs/compileSpliceCands/list.c moved 4.3% diff
auxprogs/compileSpliceCands/list.c
augustus-3.2.1/src/parser/parser.ih moved 0.0%
src/parser/parser.ih
augustus-3.2.1/src/scanner/scanner.ih moved 0.0%
src/scanner/scanner.ih

C++ Programs (all 163):

NameStatusDeltaVisual Diff
augustus-3.2.1/auxprogs/bam2hints/bam2hints.cc moved 0.5% diff
auxprogs/bam2hints/bam2hints.cc
augustus-3.2.1/auxprogs/filterBam/src/filterBam.cc moved 0.0%
auxprogs/filterBam/src/filterBam.cc
augustus-3.2.1/auxprogs/filterBam/src/functions/getReferenceLength.cc moved 0.0%
auxprogs/filterBam/src/functions/getReferenceLength.cc
augustus-3.2.1/auxprogs/filterBam/src/functions/getReferenceName.cc moved 0.0%
auxprogs/filterBam/src/functions/getReferenceName.cc
augustus-3.2.1/auxprogs/filterBam/src/functions/initOptions.cc moved 0.0%
auxprogs/filterBam/src/functions/initOptions.cc
augustus-3.2.1/auxprogs/filterBam/src/functions/MatePairs.cc moved 0.0%
auxprogs/filterBam/src/functions/MatePairs.cc
augustus-3.2.1/auxprogs/filterBam/src/functions/PairednessCoverage.cc moved 0.0%
auxprogs/filterBam/src/functions/PairednessCoverage.cc
augustus-3.2.1/auxprogs/filterBam/src/functions/printCigarOperations.cc moved 0.0%
auxprogs/filterBam/src/functions/printCigarOperations.cc
augustus-3.2.1/auxprogs/filterBam/src/functions/printElapsedTime.cc moved 0.0%
auxprogs/filterBam/src/functions/printElapsedTime.cc
augustus-3.2.1/auxprogs/filterBam/src/functions/SingleAlignment.cc moved 0.0%
auxprogs/filterBam/src/functions/SingleAlignment.cc
augustus-3.2.1/auxprogs/filterBam/src/functions/sumDandIOperations.cc moved 0.0%
auxprogs/filterBam/src/functions/sumDandIOperations.cc
augustus-3.2.1/auxprogs/filterBam/src/functions/sumMandIOperations.cc moved 0.0%
auxprogs/filterBam/src/functions/sumMandIOperations.cc
augustus-3.2.1/auxprogs/homGeneMapping/src/gene.cc moved 0.0%
auxprogs/homGeneMapping/src/gene.cc
augustus-3.2.1/auxprogs/homGeneMapping/src/genome.cc moved 4.7% diff
auxprogs/homGeneMapping/src/genome.cc
augustus-3.2.1/auxprogs/homGeneMapping/src/main.cc moved 2.6% diff
auxprogs/homGeneMapping/src/main.cc
augustus-3.2.1/auxprogs/joingenes/jg_ios.cpp moved 10.1% diff
auxprogs/joingenes/jg_ios.cpp
augustus-3.2.1/auxprogs/joingenes/jg_transcript.cpp moved 18.7% diff
auxprogs/joingenes/jg_transcript.cpp
augustus-3.2.1/auxprogs/joingenes/joingenes.cpp moved 1.1% diff
auxprogs/joingenes/joingenes.cpp
augustus-3.2.1/src/alignment.cc moved 0.6% diff
src/alignment.cc
augustus-3.2.1/src/augustus.cc moved 0.0%
src/augustus.cc
augustus-3.2.1/src/baumwelch.cc moved 0.0%
src/baumwelch.cc
augustus-3.2.1/src/commontrain.cc moved 0.0%
src/commontrain.cc
augustus-3.2.1/src/compgenepred.cc moved 19.5% diff
src/compgenepred.cc
augustus-3.2.1/src/consensus.cc moved 0.3% diff
src/consensus.cc
augustus-3.2.1/src/consensusFinder.cc moved 0.0%
src/consensusFinder.cc
augustus-3.2.1/src/contentmodel.cc moved 0.0%
src/contentmodel.cc
augustus-3.2.1/src/contTimeMC.cc moved 30.0% diff
src/contTimeMC.cc
augustus-3.2.1/src/curve2hints.cc moved 0.0%
src/curve2hints.cc
augustus-3.2.1/src/dummy.cc moved 0.0%
src/dummy.cc
augustus-3.2.1/src/etraining.cc moved 0.0%
src/etraining.cc
augustus-3.2.1/src/evaluate.cc moved 0.0%
src/evaluate.cc
augustus-3.2.1/src/evaluation.cc moved 0.0%
src/evaluation.cc
augustus-3.2.1/src/exon_seg.cc moved 0.3% diff
src/exon_seg.cc
augustus-3.2.1/src/exoncand.cc moved 0.2% diff
src/exoncand.cc
augustus-3.2.1/src/exonmodel.cc moved 0.0%
src/exonmodel.cc
augustus-3.2.1/src/exontrain.cc moved 0.0%
src/exontrain.cc
augustus-3.2.1/src/extrinsicinfo.cc moved 0.0%
src/extrinsicinfo.cc
augustus-3.2.1/src/fasta.cc moved 0.0%
src/fasta.cc
augustus-3.2.1/src/fastBlockSearch.cc moved 0.0%
src/fastBlockSearch.cc
augustus-3.2.1/src/genbank.cc moved 0.0%
src/genbank.cc
augustus-3.2.1/src/gene.cc moved 0.1% diff
src/gene.cc
augustus-3.2.1/src/geneMSA.cc moved 29.0% diff
src/geneMSA.cc
augustus-3.2.1/src/geneticcode.cc moved 0.0%
src/geneticcode.cc
augustus-3.2.1/src/genomicMSA.cc moved 0.0%
src/genomicMSA.cc
augustus-3.2.1/src/getSeq.cc moved 0.0%
src/getSeq.cc
augustus-3.2.1/src/graph.cc moved 1.9% diff
src/graph.cc
augustus-3.2.1/src/hints.cc moved 0.0%
src/hints.cc
augustus-3.2.1/src/igenicmodel.cc moved 0.0%
src/igenicmodel.cc
augustus-3.2.1/src/igenictrain.cc moved 0.0%
src/igenictrain.cc
augustus-3.2.1/src/intronmodel.cc moved 0.0%
src/intronmodel.cc
augustus-3.2.1/src/introntrain.cc moved 0.4% diff
src/introntrain.cc
augustus-3.2.1/src/lldouble.cc moved 0.0%
src/lldouble.cc
augustus-3.2.1/src/load2db.cc moved 0.0%
src/load2db.cc
augustus-3.2.1/src/logdoubletest.cc moved 0.0%
src/logdoubletest.cc
augustus-3.2.1/src/mea.cc moved 0.0%
src/mea.cc
augustus-3.2.1/src/meaPath.cc moved 0.0%
src/meaPath.cc
augustus-3.2.1/src/merkmal.cc moved 0.0%
src/merkmal.cc
augustus-3.2.1/src/motif.cc moved 0.0%
src/motif.cc
augustus-3.2.1/src/namgene.cc moved 0.0%
src/namgene.cc
augustus-3.2.1/src/ncmodel.cc moved 0.0%
src/ncmodel.cc
augustus-3.2.1/src/orthoexon.cc moved 38.2% diff
src/orthoexon.cc
augustus-3.2.1/src/orthogene.cc moved 0.0%
src/orthogene.cc
augustus-3.2.1/src/orthograph.cc moved 9.0% diff
src/orthograph.cc
augustus-3.2.1/src/parser/parse.cc moved 0.0%
src/parser/parse.cc
augustus-3.2.1/src/phylotree.cc moved 15.6% diff
src/phylotree.cc
augustus-3.2.1/src/pp_fastBlockSearcher.cc moved 0.0%
src/pp_fastBlockSearcher.cc
augustus-3.2.1/src/pp_hitseq.cc moved 0.0%
src/pp_hitseq.cc
augustus-3.2.1/src/pp_prepare_align.cc moved 0.0%
src/pp_prepare_align.cc
augustus-3.2.1/src/pp_profile.cc moved 0.0%
src/pp_profile.cc
augustus-3.2.1/src/pp_scoring.cc moved 0.1% diff
src/pp_scoring.cc
augustus-3.2.1/src/projectio.cc moved 0.0%
src/projectio.cc
augustus-3.2.1/src/properties.cc moved 0.7% diff
src/properties.cc
augustus-3.2.1/src/randseqaccess.cc moved 0.0%
src/randseqaccess.cc
augustus-3.2.1/src/scanner/lex.cc moved 0.0%
src/scanner/lex.cc
augustus-3.2.1/src/speciesgraph.cc moved 6.7% diff
src/speciesgraph.cc
augustus-3.2.1/src/sqliteDB.cc moved 0.0%
src/sqliteDB.cc
augustus-3.2.1/src/statemodel.cc moved 0.0%
src/statemodel.cc
augustus-3.2.1/src/types.cc moved 2.5% diff
src/types.cc
augustus-3.2.1/src/utrmodel.cc moved 0.0%
src/utrmodel.cc
augustus-3.2.1/src/utrtrain.cc moved 0.0%
src/utrtrain.cc
augustus-3.2.1/src/vitmatrix.cc moved 0.0%
src/vitmatrix.cc
src/load2sqlitedb.cc added

Fortran Programs (all 227):

NameStatusDeltaVisual Diff
augustus-3.2.1/config/species/adorsata/generic_igenic_probs.pbl moved 0.0%
config/species/adorsata/generic_igenic_probs.pbl
augustus-3.2.1/config/species/aedes/aedes_igenic_probs.pbl moved 0.0%
config/species/aedes/aedes_igenic_probs.pbl
augustus-3.2.1/config/species/amphimedon/amphimedon_igenic_probs.pbl moved 0.0%
config/species/amphimedon/amphimedon_igenic_probs.pbl
augustus-3.2.1/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_igenic_probs.pbl moved 0.0%
config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_igenic_probs.pbl
augustus-3.2.1/config/species/anidulans/anidulans_igenic_probs.pbl moved 0.0%
config/species/anidulans/anidulans_igenic_probs.pbl
augustus-3.2.1/config/species/arabidopsis/arabidopsis_igenic_probs.pbl moved 0.0%
config/species/arabidopsis/arabidopsis_igenic_probs.pbl
augustus-3.2.1/config/species/aspergillus_fumigatus/aspergillus_fumigatus_igenic_probs.pbl moved 0.0%
config/species/aspergillus_fumigatus/aspergillus_fumigatus_igenic_probs.pbl
augustus-3.2.1/config/species/aspergillus_nidulans/aspergillus_nidulans_igenic_probs.pbl moved 0.0%
config/species/aspergillus_nidulans/aspergillus_nidulans_igenic_probs.pbl
augustus-3.2.1/config/species/aspergillus_oryzae/aspergillus_oryzae_igenic_probs.pbl moved 0.0%
config/species/aspergillus_oryzae/aspergillus_oryzae_igenic_probs.pbl
augustus-3.2.1/config/species/aspergillus_terreus/aspergillus_terreus_igenic_probs.pbl moved 0.0%
config/species/aspergillus_terreus/aspergillus_terreus_igenic_probs.pbl
augustus-3.2.1/config/species/b_pseudomallei/b_pseudomallei_igenic_probs.pbl moved 0.0%
config/species/b_pseudomallei/b_pseudomallei_igenic_probs.pbl
augustus-3.2.1/config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl moved 0.0%
config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl
augustus-3.2.1/config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl.withoutCRF moved 0.0%
config/species/bombus_impatiens1/bombus_impatiens1_igenic_probs.pbl.withoutCRF
augustus-3.2.1/config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl moved 0.0%
config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl
augustus-3.2.1/config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl.withoutCRF moved 0.0%
config/species/bombus_terrestris2/bombus_terrestris2_igenic_probs.pbl.withoutCRF
augustus-3.2.1/config/species/botrytis_cinerea/botrytis_cinerea_igenic_probs.pbl moved 0.0%
config/species/botrytis_cinerea/botrytis_cinerea_igenic_probs.pbl
augustus-3.2.1/config/species/brugia/brugia_igenic_probs.pbl moved 0.0%
config/species/brugia/brugia_igenic_probs.pbl
augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl moved 0.0%
config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl
augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl.withoutCRF moved 0.0%
config/species/c_elegans_trsk/c_elegans_trsk_igenic_probs.pbl.withoutCRF
augustus-3.2.1/config/species/cacao/cacao_igenic_probs.pbl moved 0.0%
config/species/cacao/cacao_igenic_probs.pbl
augustus-3.2.1/config/species/caenorhabditis/caenorhabditis_igenic_probs.pbl moved 0.0%
config/species/caenorhabditis/caenorhabditis_igenic_probs.pbl
augustus-3.2.1/config/species/camponotus_floridanus/camponotus_floridanus_igenic_probs.pbl moved 0.0%
config/species/camponotus_floridanus/camponotus_floridanus_igenic_probs.pbl
augustus-3.2.1/config/species/candida_albicans/candida_albicans_igenic_probs.pbl moved 0.0%
config/species/candida_albicans/candida_albicans_igenic_probs.pbl
augustus-3.2.1/config/species/candida_guilliermondii/candida_guilliermondii_igenic_probs.pbl moved 0.0%
config/species/candida_guilliermondii/candida_guilliermondii_igenic_probs.pbl
augustus-3.2.1/config/species/candida_tropicalis/candida_tropicalis_igenic_probs.pbl moved 0.0%
config/species/candida_tropicalis/candida_tropicalis_igenic_probs.pbl
augustus-3.2.1/config/species/chaetomium_globosum/chaetomium_globosum_igenic_probs.pbl moved 0.0%
config/species/chaetomium_globosum/chaetomium_globosum_igenic_probs.pbl
augustus-3.2.1/config/species/chicken/chicken_igenic_probs.pbl moved 0.0%
config/species/chicken/chicken_igenic_probs.pbl
augustus-3.2.1/config/species/chlamy2011/chlamy2011_igenic_probs.pbl moved 0.0%
config/species/chlamy2011/chlamy2011_igenic_probs.pbl
augustus-3.2.1/config/species/chlamydomonas/chlamydomonas_igenic_probs.pbl moved 0.0%
config/species/chlamydomonas/chlamydomonas_igenic_probs.pbl
augustus-3.2.1/config/species/chlorella/chlorella_igenic_probs.pbl moved 0.0%
config/species/chlorella/chlorella_igenic_probs.pbl
augustus-3.2.1/config/species/coccidioides_immitis/coccidioides_immitis_igenic_probs.pbl moved 0.0%
config/species/coccidioides_immitis/coccidioides_immitis_igenic_probs.pbl
augustus-3.2.1/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_igenic_probs.pbl moved 0.0%
config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_igenic_probs.pbl
augustus-3.2.1/config/species/coprinus/coprinus_igenic_probs.pbl moved 0.0%
config/species/coprinus/coprinus_igenic_probs.pbl
augustus-3.2.1/config/species/coprinus_cinereus/coprinus_cinereus_igenic_probs.pbl moved 0.0%
config/species/coprinus_cinereus/coprinus_cinereus_igenic_probs.pbl
augustus-3.2.1/config/species/coyote_tobacco/coyote_tobacco_igenic_probs.pbl removed
augustus-3.2.1/config/species/cryptococcus/cryptococcus_igenic_probs.pbl moved 0.0%
config/species/cryptococcus/cryptococcus_igenic_probs.pbl
augustus-3.2.1/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_igenic_
probs.pbl
moved 0.0%
config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_igenic_probs.pbl
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoforma
ns_B_igenic_probs.pbl
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_igenic_probs.pbl
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neof
ormans_JEC21_igenic_probs.pbl
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_igenic_probs.pbl
augustus-3.2.1/config/species/culex/culex_igenic_probs.pbl moved 0.0%
config/species/culex/culex_igenic_probs.pbl
augustus-3.2.1/config/species/culex/culex_igenic_probs.pbl.wech moved 0.0%
config/species/culex/culex_igenic_probs.pbl.wech
augustus-3.2.1/config/species/culex/culex_intron_probs.pbl moved 0.0%
config/species/culex/culex_intron_probs.pbl
augustus-3.2.1/config/species/debaryomyces_hansenii/debaryomyces_hansenii_igenic_probs.pbl moved 0.0%
config/species/debaryomyces_hansenii/debaryomyces_hansenii_igenic_probs.pbl
augustus-3.2.1/config/species/E_coli_K12/E_coli_K12_igenic_probs.pbl moved 0.0%
config/species/E_coli_K12/E_coli_K12_igenic_probs.pbl
augustus-3.2.1/config/species/elegans/elegans_igenic_probs.pbl removed
augustus-3.2.1/config/species/elephant_shark/elephant_shark_igenic_probs.pbl moved 0.0%
config/species/elephant_shark/elephant_shark_igenic_probs.pbl
augustus-3.2.1/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_igenic_probs.
pbl
moved 0.0%
config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_igenic_probs.pbl
augustus-3.2.1/config/species/eremothecium_gossypii/eremothecium_gossypii_igenic_probs.pbl moved 0.0%
config/species/eremothecium_gossypii/eremothecium_gossypii_igenic_probs.pbl
augustus-3.2.1/config/species/fly/fly_igenic_probs.pbl moved 0.0%
config/species/fly/fly_igenic_probs.pbl
augustus-3.2.1/config/species/fusarium/fusarium_igenic_probs.pbl moved 0.0%
config/species/fusarium/fusarium_igenic_probs.pbl
augustus-3.2.1/config/species/fusarium_graminearum/fusarium_graminearum_igenic_probs.pbl moved 0.0%
config/species/fusarium_graminearum/fusarium_graminearum_igenic_probs.pbl
augustus-3.2.1/config/species/galdieria/galdieria_igenic_probs.pbl moved 0.0%
config/species/galdieria/galdieria_igenic_probs.pbl
augustus-3.2.1/config/species/generic/generic_igenic_probs.pbl removed
augustus-3.2.1/config/species/generic/generic_igenic_probs.pbl.test removed
augustus-3.2.1/config/species/heliconius_melpomene1/heliconius_melpomene1_igenic_probs.pbl moved 0.0%
config/species/heliconius_melpomene1/heliconius_melpomene1_igenic_probs.pbl
augustus-3.2.1/config/species/histoplasma/histoplasma_igenic_probs.pbl moved 0.0%
config/species/histoplasma/histoplasma_igenic_probs.pbl
augustus-3.2.1/config/species/histoplasma_capsulatum/histoplasma_capsulatum_igenic_probs.pbl moved 0.0%
config/species/histoplasma_capsulatum/histoplasma_capsulatum_igenic_probs.pbl
augustus-3.2.1/config/species/honeybee1/honeybee1_igenic_probs.pbl moved 0.0%
config/species/honeybee1/honeybee1_igenic_probs.pbl
augustus-3.2.1/config/species/honeybee1/honeybee1_igenic_probs.pbl.withoutCRF moved 0.0%
config/species/honeybee1/honeybee1_igenic_probs.pbl.withoutCRF
augustus-3.2.1/config/species/human/human_igenic_probs.pbl moved 0.0%
config/species/human/human_igenic_probs.pbl
augustus-3.2.1/config/species/kluyveromyces_lactis/kluyveromyces_lactis_igenic_probs.pbl moved 0.0%
config/species/kluyveromyces_lactis/kluyveromyces_lactis_igenic_probs.pbl
augustus-3.2.1/config/species/laccaria_bicolor/laccaria_bicolor_igenic_probs.pbl moved 0.0%
config/species/laccaria_bicolor/laccaria_bicolor_igenic_probs.pbl
augustus-3.2.1/config/species/lamprey/lamprey_igenic_probs.pbl moved 0.0%
config/species/lamprey/lamprey_igenic_probs.pbl
augustus-3.2.1/config/species/leishmania_tarentolae/leishmania_tarentolae_igenic_probs.pbl moved 0.0%
config/species/leishmania_tarentolae/leishmania_tarentolae_igenic_probs.pbl
augustus-3.2.1/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_igenic_probs.pbl moved 0.0%
config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_igenic_probs.pbl
augustus-3.2.1/config/species/magnaporthe_grisea/magnaporthe_grisea_igenic_probs.pbl moved 0.0%
config/species/magnaporthe_grisea/magnaporthe_grisea_igenic_probs.pbl
augustus-3.2.1/config/species/maize/maize_igenic_probs.pbl moved 0.0%
config/species/maize/maize_igenic_probs.pbl
augustus-3.2.1/config/species/maize5/maize5_igenic_probs.pbl moved 0.0%
config/species/maize5/maize5_igenic_probs.pbl
augustus-3.2.1/config/species/maker2_athal1/maker2_athal1_igenic_probs.pbl removed
augustus-3.2.1/config/species/maker2_c_elegans1/maker2_c_elegans1_igenic_probs.pbl removed
augustus-3.2.1/config/species/maker2_dmel1/maker2_dmel1_igenic_probs.pbl removed
augustus-3.2.1/config/species/maker2_spomb1/maker2_spomb1_igenic_probs.pbl removed
augustus-3.2.1/config/species/nasonia/nasonia_igenic_probs.pbl moved 0.0%
config/species/nasonia/nasonia_igenic_probs.pbl
augustus-3.2.1/config/species/nasonia/nasonia_intron_probs.pbl moved 0.0%
config/species/nasonia/nasonia_intron_probs.pbl
augustus-3.2.1/config/species/neurospora/neurospora_igenic_probs.pbl moved 0.0%
config/species/neurospora/neurospora_igenic_probs.pbl
augustus-3.2.1/config/species/neurospora_crassa/neurospora_crassa_igenic_probs.pbl moved 0.0%
config/species/neurospora_crassa/neurospora_crassa_igenic_probs.pbl
augustus-3.2.1/config/species/parasteatoda/parasteatoda_igenic_probs.pbl moved 0.0%
config/species/parasteatoda/parasteatoda_igenic_probs.pbl
augustus-3.2.1/config/species/pchrysosporium/pchrysosporium_igenic_probs.pbl moved 0.0%
config/species/pchrysosporium/pchrysosporium_igenic_probs.pbl
augustus-3.2.1/config/species/pea_aphid/pea_aphid_igenic_probs.pbl moved 0.0%
config/species/pea_aphid/pea_aphid_igenic_probs.pbl
augustus-3.2.1/config/species/pfalciparum/pfalciparum_igenic_probs.pbl moved 0.0%
config/species/pfalciparum/pfalciparum_igenic_probs.pbl
augustus-3.2.1/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_igenic_probs.
pbl
moved 0.0%
config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_igenic_probs.pbl
augustus-3.2.1/config/species/pichia_stipitis/pichia_stipitis_igenic_probs.pbl moved 0.0%
config/species/pichia_stipitis/pichia_stipitis_igenic_probs.pbl
augustus-3.2.1/config/species/pneumocystis/pneumocystis_igenic_probs.pbl moved 0.0%
config/species/pneumocystis/pneumocystis_igenic_probs.pbl
augustus-3.2.1/config/species/rhizopus_oryzae/rhizopus_oryzae_igenic_probs.pbl moved 0.0%
config/species/rhizopus_oryzae/rhizopus_oryzae_igenic_probs.pbl
augustus-3.2.1/config/species/rhodnius/rhodnius_igenic_probs.pbl moved 0.0%
config/species/rhodnius/rhodnius_igenic_probs.pbl
augustus-3.2.1/config/species/rice/rice_igenic_probs.pbl moved 0.0%
config/species/rice/rice_igenic_probs.pbl
augustus-3.2.1/config/species/s_aureus/s_aureus_igenic_probs.pbl moved 0.0%
config/species/s_aureus/s_aureus_igenic_probs.pbl
augustus-3.2.1/config/species/s_pneumoniae/s_pneumoniae_igenic_probs.pbl moved 0.0%
config/species/s_pneumoniae/s_pneumoniae_igenic_probs.pbl
augustus-3.2.1/config/species/saccharomyces/saccharomyces_igenic_probs.pbl moved 0.0%
config/species/saccharomyces/saccharomyces_igenic_probs.pbl
augustus-3.2.1/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1
_igenic_probs.pbl
moved 0.0%
config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1_igenic_probs.pbl
augustus-3.2.1/config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_igenic_
probs.pbl
moved 0.0%
config/species/saccharomyces_cerevisiae_S288C/saccharomyces_cerevisiae_S288C_igenic_probs.pbl
augustus-3.2.1/config/species/schistosoma/schistosoma_igenic_probs.pbl moved 0.0%
config/species/schistosoma/schistosoma_igenic_probs.pbl
augustus-3.2.1/config/species/schistosoma2/schistosoma2_igenic_probs.pbl moved 0.0%
config/species/schistosoma2/schistosoma2_igenic_probs.pbl
augustus-3.2.1/config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_igenic_probs.pbl moved 0.0%
config/species/schizosaccharomyces_pombe/schizosaccharomyces_pombe_igenic_probs.pbl
augustus-3.2.1/config/species/seahare/seahare_igenic_probs.pbl removed
augustus-3.2.1/config/species/seahare/seahare_igenic_probs.pbl.withoutCRF removed
augustus-3.2.1/config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_igenic_probs.pbl moved 0.0%
config/species/sulfolobus_solfataricus/sulfolobus_solfataricus_igenic_probs.pbl
augustus-3.2.1/config/species/tetrahymena/tetrahymena_igenic_probs.pbl moved 0.0%
config/species/tetrahymena/tetrahymena_igenic_probs.pbl
augustus-3.2.1/config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_ige
nic_probs.pbl
moved 0.0%
config/species/thermoanaerobacter_tengcongensis/thermoanaerobacter_tengcongensis_igenic_probs.pbl
augustus-3.2.1/config/species/tomato/tomato_igenic_probs.pbl moved 0.0%
config/species/tomato/tomato_igenic_probs.pbl
augustus-3.2.1/config/species/toxoplasma/toxoplasma_igenic_probs.pbl moved 0.0%
config/species/toxoplasma/toxoplasma_igenic_probs.pbl
augustus-3.2.1/config/species/tribolium2012/tribolium2012_igenic_probs.pbl moved 0.0%
config/species/tribolium2012/tribolium2012_igenic_probs.pbl
augustus-3.2.1/config/species/tribolium2012/tribolium2012_igenic_probs.pbl.HMM moved 0.0%
config/species/tribolium2012/tribolium2012_igenic_probs.pbl.HMM
augustus-3.2.1/config/species/tribolium2012/tribolium2012_igenic_probs.pbl1 moved 0.0%
config/species/tribolium2012/tribolium2012_igenic_probs.pbl1
augustus-3.2.1/config/species/tribolium2012/tribolium2012_igenic_probs.pbl2 moved 0.0%
config/species/tribolium2012/tribolium2012_igenic_probs.pbl2
augustus-3.2.1/config/species/tribolium2012/tribolium2012_igenic_probs.pbl3 moved 0.0%
config/species/tribolium2012/tribolium2012_igenic_probs.pbl3
augustus-3.2.1/config/species/tribolium2012/tribolium2012_igenic_probs.pbl4 moved 0.0%
config/species/tribolium2012/tribolium2012_igenic_probs.pbl4
augustus-3.2.1/config/species/trichinella/trichinella_igenic_probs.pbl moved 0.0%
config/species/trichinella/trichinella_igenic_probs.pbl
augustus-3.2.1/config/species/trichinella/trichinella_intron_probs.pbl moved 0.0%
config/species/trichinella/trichinella_intron_probs.pbl
augustus-3.2.1/config/species/ustilago/ustilago_igenic_probs.pbl moved 0.0%
config/species/ustilago/ustilago_igenic_probs.pbl
augustus-3.2.1/config/species/ustilago_maydis/ustilago_maydis_igenic_probs.pbl moved 0.0%
config/species/ustilago_maydis/ustilago_maydis_igenic_probs.pbl
augustus-3.2.1/config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_igenic_probs.pbl moved 0.0%
config/species/verticillium_albo_atrum1/verticillium_albo_atrum1_igenic_probs.pbl
augustus-3.2.1/config/species/verticillium_longisporum1/verticillium_longisporum1_igenic_probs.pbl moved 0.0%
config/species/verticillium_longisporum1/verticillium_longisporum1_igenic_probs.pbl
augustus-3.2.1/config/species/wheat/wheat_igenic_probs.pbl moved 0.0%
config/species/wheat/wheat_igenic_probs.pbl
augustus-3.2.1/config/species/Xipophorus_maculatus/Xipophorus_maculatus_igenic_probs.pbl moved 0.0%
config/species/Xipophorus_maculatus/Xipophorus_maculatus_igenic_probs.pbl
augustus-3.2.1/config/species/yarrowia_lipolytica/yarrowia_lipolytica_igenic_probs.pbl moved 0.0%
config/species/yarrowia_lipolytica/yarrowia_lipolytica_igenic_probs.pbl
augustus-3.2.1/config/species/zebrafish/zebrafish_igenic_probs.pbl moved 0.0%
config/species/zebrafish/zebrafish_igenic_probs.pbl
augustus-3.2.1/config/species/zebrafish/zebrafish_igenic_probs.pbl.HMM moved 0.0%
config/species/zebrafish/zebrafish_igenic_probs.pbl.HMM
config/species/volvox/volvox_igenic_probs.pbl added

Perl Modules (all 4):

NameStatusDeltaVisual Diff
augustus-3.2.1/scripts/helpMod.pm moved 0.0%
scripts/helpMod.pm
augustus-3.2.1/scripts/SplicedAlignment.pm moved 0.0%
scripts/SplicedAlignment.pm

Perl Programs (all 160):

NameStatusDeltaVisual Diff
augustus-3.2.1/docs/tutorial/data/gff2browser.pl moved 0.0%
docs/tutorial/data/gff2browser.pl
augustus-3.2.1/scripts/augustus2browser.pl moved 0.0%
scripts/augustus2browser.pl
augustus-3.2.1/scripts/augustus2gbrowse.pl moved 0.0%
scripts/augustus2gbrowse.pl
augustus-3.2.1/scripts/autoAug.pl moved 0.0%
scripts/autoAug.pl
augustus-3.2.1/scripts/autoAugPred.pl moved 0.0%
scripts/autoAugPred.pl
augustus-3.2.1/scripts/autoAugTrain.pl moved 0.0%
scripts/autoAugTrain.pl
augustus-3.2.1/scripts/bedgraph2wig.pl moved 0.0%
scripts/bedgraph2wig.pl
augustus-3.2.1/scripts/blat2gbrowse.pl moved 0.0%
scripts/blat2gbrowse.pl
augustus-3.2.1/scripts/blat2hints.pl moved 0.5% diff
scripts/blat2hints.pl
augustus-3.2.1/scripts/block2prfl.pl moved 0.0%
scripts/block2prfl.pl
augustus-3.2.1/scripts/cegma2gff.pl moved 0.0%
scripts/cegma2gff.pl
augustus-3.2.1/scripts/checkParamArchive.pl moved 0.0%
scripts/checkParamArchive.pl
augustus-3.2.1/scripts/cleanDOSfasta.pl moved 0.0%
scripts/cleanDOSfasta.pl
augustus-3.2.1/scripts/clusterAndSplitGenes.pl moved 0.0%
scripts/clusterAndSplitGenes.pl
augustus-3.2.1/scripts/createAugustusJoblist.pl moved 0.0%
scripts/createAugustusJoblist.pl
augustus-3.2.1/scripts/del_from_prfl.pl moved 0.0%
scripts/del_from_prfl.pl
augustus-3.2.1/scripts/evalCGP.pl moved 7.1% diff
scripts/evalCGP.pl
augustus-3.2.1/scripts/exonerate2hints.pl moved 0.0%
scripts/exonerate2hints.pl
augustus-3.2.1/scripts/exoniphyDb2hints.pl moved 0.0%
scripts/exoniphyDb2hints.pl
augustus-3.2.1/scripts/extractTranscriptEnds.pl moved 0.0%
scripts/extractTranscriptEnds.pl
augustus-3.2.1/scripts/filter-ppx.pl moved 0.0%
scripts/filter-ppx.pl
augustus-3.2.1/scripts/filterGenes.pl moved 0.0%
scripts/filterGenes.pl
augustus-3.2.1/scripts/filterGenesIn_mRNAname.pl moved 49.2% diff
scripts/filterGenesIn_mRNAname.pl
augustus-3.2.1/scripts/filterGenesOut_mRNAname.pl moved 0.0%
scripts/filterGenesOut_mRNAname.pl
augustus-3.2.1/scripts/filterInFrameStopCodons.pl moved 0.0%
scripts/filterInFrameStopCodons.pl
augustus-3.2.1/scripts/filterMaf.pl moved 0.0%
scripts/filterMaf.pl
augustus-3.2.1/scripts/filterPSL.pl moved 0.0%
scripts/filterPSL.pl
augustus-3.2.1/scripts/filterShrimp.pl moved 0.0%
scripts/filterShrimp.pl
augustus-3.2.1/scripts/filterSpliceHints.pl moved 0.0%
scripts/filterSpliceHints.pl
augustus-3.2.1/scripts/gbrowseold2gff3.pl moved 0.0%
scripts/gbrowseold2gff3.pl
augustus-3.2.1/scripts/gbSmallDNA2gff.pl moved 0.0%
scripts/gbSmallDNA2gff.pl
augustus-3.2.1/scripts/getAnnoFasta.pl moved 2.1% diff
scripts/getAnnoFasta.pl
augustus-3.2.1/scripts/gff2gbSmallDNA.pl moved 0.0%
scripts/gff2gbSmallDNA.pl
augustus-3.2.1/scripts/gffGetmRNA.pl moved 0.0%
scripts/gffGetmRNA.pl
augustus-3.2.1/scripts/gp2othergp.pl moved 0.0%
scripts/gp2othergp.pl
augustus-3.2.1/scripts/gtf2gff.pl moved 0.0%
scripts/gtf2gff.pl
augustus-3.2.1/scripts/hal2maf_split.pl moved 0.0%
scripts/hal2maf_split.pl
augustus-3.2.1/scripts/intron2exex.pl moved 0.0%
scripts/intron2exex.pl
augustus-3.2.1/scripts/join_aug_pred.pl moved 0.0%
scripts/join_aug_pred.pl
augustus-3.2.1/scripts/join_mult_hints.pl moved 0.0%
scripts/join_mult_hints.pl
augustus-3.2.1/scripts/joinPeptides.pl moved 0.0%
scripts/joinPeptides.pl
augustus-3.2.1/scripts/maf2conswig.pl moved 0.0%
scripts/maf2conswig.pl
augustus-3.2.1/scripts/makeMatchLists.pl moved 0.0%
scripts/makeMatchLists.pl
augustus-3.2.1/scripts/makeUtrTrainingSet.pl moved 0.0%
scripts/makeUtrTrainingSet.pl
augustus-3.2.1/scripts/maskNregions.pl moved 0.0%
scripts/maskNregions.pl
augustus-3.2.1/scripts/moveParameters.pl moved 0.0%
scripts/moveParameters.pl
augustus-3.2.1/scripts/msa2prfl.pl moved 0.0%
scripts/msa2prfl.pl
augustus-3.2.1/scripts/new_species.pl moved 0.0%
scripts/new_species.pl
augustus-3.2.1/scripts/opt_init_and_term_probs.pl moved 0.0%
scripts/opt_init_and_term_probs.pl
augustus-3.2.1/scripts/optimize_augustus.pl moved 0.3% diff
scripts/optimize_augustus.pl
augustus-3.2.1/scripts/parseSim4Output.pl moved 0.0%
scripts/parseSim4Output.pl
augustus-3.2.1/scripts/partition_gtf2gb.pl moved 0.5% diff
scripts/partition_gtf2gb.pl
augustus-3.2.1/scripts/pasapolyA2hints.pl moved 0.0%
scripts/pasapolyA2hints.pl
augustus-3.2.1/scripts/peptides2alternatives.pl moved 0.0%
scripts/peptides2alternatives.pl
augustus-3.2.1/scripts/peptides2hints.pl moved 0.0%
scripts/peptides2hints.pl
augustus-3.2.1/scripts/phastconsDB2hints.pl moved 0.0%
scripts/phastconsDB2hints.pl
augustus-3.2.1/scripts/polyA2hints.pl moved 0.0%
scripts/polyA2hints.pl
augustus-3.2.1/scripts/prints2prfl.pl moved 0.0%
scripts/prints2prfl.pl
augustus-3.2.1/scripts/pslMap.pl moved 0.0%
scripts/pslMap.pl
augustus-3.2.1/scripts/randomSplit.pl moved 0.0%
scripts/randomSplit.pl
augustus-3.2.1/scripts/ratewig.pl moved 0.0%
scripts/ratewig.pl
augustus-3.2.1/scripts/retroDB2hints.pl moved 0.0%
scripts/retroDB2hints.pl
augustus-3.2.1/scripts/rmRedundantHints.pl moved 0.0%
scripts/rmRedundantHints.pl
augustus-3.2.1/scripts/runAllSim4.pl moved 0.0%
scripts/runAllSim4.pl
augustus-3.2.1/scripts/samMap.pl moved 0.0%
scripts/samMap.pl
augustus-3.2.1/scripts/scipiogff2gff.pl moved 0.0%
scripts/scipiogff2gff.pl
augustus-3.2.1/scripts/selectLongestORFs.pl moved 0.0%
scripts/selectLongestORFs.pl
augustus-3.2.1/scripts/simpleFastaHeaders.pl moved 0.0%
scripts/simpleFastaHeaders.pl
augustus-3.2.1/scripts/simplifyFastaHeaders.pl moved 13.9% diff
scripts/simplifyFastaHeaders.pl
augustus-3.2.1/scripts/split_wiggle.pl moved 0.0%
scripts/split_wiggle.pl
augustus-3.2.1/scripts/splitMfasta.pl moved 0.0%
scripts/splitMfasta.pl
augustus-3.2.1/scripts/summarizeACGTcontent.pl moved 0.0%
scripts/summarizeACGTcontent.pl
augustus-3.2.1/scripts/transMap2hints.pl moved 0.0%
scripts/transMap2hints.pl
augustus-3.2.1/scripts/uniquePeptides.pl moved 0.0%
scripts/uniquePeptides.pl
augustus-3.2.1/scripts/utrgff2gbrowse.pl moved 0.0%
scripts/utrgff2gbrowse.pl
augustus-3.2.1/scripts/weedMaf.pl moved 0.0%
scripts/weedMaf.pl
augustus-3.2.1/scripts/wig2hints.pl moved 0.0%
scripts/wig2hints.pl
augustus-3.2.1/scripts/wigchoose.pl moved 0.0%
scripts/wigchoose.pl
augustus-3.2.1/scripts/writeResultsPage.pl moved 0.0%
scripts/writeResultsPage.pl
augustus-3.2.1/scripts/yaml2gff.1.4.pl moved 0.0%
scripts/yaml2gff.1.4.pl

Shell Programs (all 6):

NameStatusDeltaVisual Diff
augustus-3.2.1/auxprogs/filterBam/data/sam2bam.sh moved 0.0%
auxprogs/filterBam/data/sam2bam.sh
augustus-3.2.1/docs/tutorial2015/results/do.sh moved 0.0%
docs/tutorial2015/results/do.sh
augustus-3.2.1/scripts/checkUTR moved 0.0%
scripts/checkUTR

Configuration Files (all 515):

NameStatusDeltaVisual Diff
augustus-3.2.1/config/cgp/log_reg_parameters.cfg moved 0.0%
config/cgp/log_reg_parameters.cfg
augustus-3.2.1/config/cgp/log_reg_parameters_arabidopsis.cfg moved 0.0%
config/cgp/log_reg_parameters_arabidopsis.cfg
augustus-3.2.1/config/cgp/log_reg_parameters_default.cfg moved 11.7% diff
config/cgp/log_reg_parameters_default.cfg
augustus-3.2.1/config/cgp/log_reg_parameters_fly.cfg moved 0.0%
config/cgp/log_reg_parameters_fly.cfg
augustus-3.2.1/config/cgp/log_reg_parameters_human.cfg moved 0.0%
config/cgp/log_reg_parameters_human.cfg
augustus-3.2.1/config/cgp/log_reg_parameters_s_aureus.cfg moved 0.0%
config/cgp/log_reg_parameters_s_aureus.cfg
augustus-3.2.1/config/extrinsic/cgp.extrinsic.cfg moved 0.0%
config/extrinsic/cgp.extrinsic.cfg
augustus-3.2.1/config/extrinsic/extrinsic.cfg moved 0.0%
config/extrinsic/extrinsic.cfg
augustus-3.2.1/config/extrinsic/extrinsic.E.cfg moved 0.0%
config/extrinsic/extrinsic.E.cfg
augustus-3.2.1/config/extrinsic/extrinsic.E.XNT.cfg moved 0.0%
config/extrinsic/extrinsic.E.XNT.cfg
augustus-3.2.1/config/extrinsic/extrinsic.M.RM.E.W.cfg moved 0.0%
config/extrinsic/extrinsic.M.RM.E.W.cfg
augustus-3.2.1/config/extrinsic/extrinsic.ME.cfg moved 0.0%
config/extrinsic/extrinsic.ME.cfg
augustus-3.2.1/config/extrinsic/extrinsic.MEMS.cfg moved 0.0%
config/extrinsic/extrinsic.MEMS.cfg
augustus-3.2.1/config/extrinsic/extrinsic.MP.cfg moved 0.0%
config/extrinsic/extrinsic.MP.cfg
augustus-3.2.1/config/extrinsic/extrinsic.MPE.cfg moved 0.0%
config/extrinsic/extrinsic.MPE.cfg
augustus-3.2.1/config/extrinsic/extrinsic.MT.cfg moved 0.0%
config/extrinsic/extrinsic.MT.cfg
augustus-3.2.1/config/model/states_shadow.cfg moved 0.0%
config/model/states_shadow.cfg
augustus-3.2.1/config/model/states_shadow_2igenic.cfg moved 0.0%
config/model/states_shadow_2igenic.cfg
augustus-3.2.1/config/model/states_shadow_bacterium.cfg moved 0.0%
config/model/states_shadow_bacterium.cfg
augustus-3.2.1/config/model/states_shadow_intronless.cfg moved 0.0%
config/model/states_shadow_intronless.cfg
augustus-3.2.1/config/model/states_shadow_utr.cfg moved 0.0%
config/model/states_shadow_utr.cfg
augustus-3.2.1/config/model/states_shadow_utr_nc.cfg moved 0.0%
config/model/states_shadow_utr_nc.cfg
augustus-3.2.1/config/model/states_singlestrand.cfg moved 0.0%
config/model/states_singlestrand.cfg
augustus-3.2.1/config/model/states_singlestrand_2igenic.cfg moved 0.0%
config/model/states_singlestrand_2igenic.cfg
augustus-3.2.1/config/species/adorsata/adorsata_parameters.cfg moved 0.0%
config/species/adorsata/adorsata_parameters.cfg
augustus-3.2.1/config/species/aedes/aedes_parameters.cfg moved 0.0%
config/species/aedes/aedes_parameters.cfg
augustus-3.2.1/config/species/amphimedon/amphimedon_metapars.cfg moved 0.0%
config/species/amphimedon/amphimedon_metapars.cfg
augustus-3.2.1/config/species/amphimedon/amphimedon_parameters.cfg moved 0.0%
config/species/amphimedon/amphimedon_parameters.cfg
augustus-3.2.1/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.cfg moved 0.0%
config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.cfg
augustus-3.2.1/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.utr.cfg moved 0.0%
config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_metapars.utr.cfg
augustus-3.2.1/config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_parameters.cfg moved 0.0%
config/species/ancylostoma_ceylanicum/ancylostoma_ceylanicum_parameters.cfg
augustus-3.2.1/config/species/anidulans/anidulans_parameters.cfg moved 0.0%
config/species/anidulans/anidulans_parameters.cfg
augustus-3.2.1/config/species/arabidopsis/arabidopsis_parameters.cfg moved 0.0%
config/species/arabidopsis/arabidopsis_parameters.cfg
augustus-3.2.1/config/species/aspergillus_fumigatus/aspergillus_fumigatus_metapars.cfg moved 0.0%
config/species/aspergillus_fumigatus/aspergillus_fumigatus_metapars.cfg
augustus-3.2.1/config/species/aspergillus_fumigatus/aspergillus_fumigatus_parameters.cfg moved 0.0%
config/species/aspergillus_fumigatus/aspergillus_fumigatus_parameters.cfg
augustus-3.2.1/config/species/aspergillus_nidulans/aspergillus_nidulans_metapars.cfg moved 0.0%
config/species/aspergillus_nidulans/aspergillus_nidulans_metapars.cfg
augustus-3.2.1/config/species/aspergillus_nidulans/aspergillus_nidulans_parameters.cfg moved 0.0%
config/species/aspergillus_nidulans/aspergillus_nidulans_parameters.cfg
augustus-3.2.1/config/species/aspergillus_oryzae/aspergillus_oryzae_metapars.cfg moved 0.0%
config/species/aspergillus_oryzae/aspergillus_oryzae_metapars.cfg
augustus-3.2.1/config/species/aspergillus_oryzae/aspergillus_oryzae_parameters.cfg moved 0.0%
config/species/aspergillus_oryzae/aspergillus_oryzae_parameters.cfg
augustus-3.2.1/config/species/aspergillus_terreus/aspergillus_terreus_metapars.cfg moved 0.0%
config/species/aspergillus_terreus/aspergillus_terreus_metapars.cfg
augustus-3.2.1/config/species/aspergillus_terreus/aspergillus_terreus_parameters.cfg moved 0.0%
config/species/aspergillus_terreus/aspergillus_terreus_parameters.cfg
augustus-3.2.1/config/species/b_pseudomallei/b_pseudomallei_metapars.cfg moved 0.0%
config/species/b_pseudomallei/b_pseudomallei_metapars.cfg
augustus-3.2.1/config/species/b_pseudomallei/b_pseudomallei_metapars.utr.cfg moved 0.0%
config/species/b_pseudomallei/b_pseudomallei_metapars.utr.cfg
augustus-3.2.1/config/species/b_pseudomallei/b_pseudomallei_parameters.cfg moved 0.0%
config/species/b_pseudomallei/b_pseudomallei_parameters.cfg
augustus-3.2.1/config/species/bombus_impatiens1/bombus_impatiens1_metapars.cfg moved 0.0%
config/species/bombus_impatiens1/bombus_impatiens1_metapars.cfg
augustus-3.2.1/config/species/bombus_impatiens1/bombus_impatiens1_metapars.utr.cfg moved 0.0%
config/species/bombus_impatiens1/bombus_impatiens1_metapars.utr.cfg
augustus-3.2.1/config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg moved 0.0%
config/species/bombus_impatiens1/bombus_impatiens1_parameters.cfg
augustus-3.2.1/config/species/bombus_terrestris2/bombus_terrestris2_metapars.cfg moved 0.0%
config/species/bombus_terrestris2/bombus_terrestris2_metapars.cfg
augustus-3.2.1/config/species/bombus_terrestris2/bombus_terrestris2_metapars.utr.cfg moved 0.0%
config/species/bombus_terrestris2/bombus_terrestris2_metapars.utr.cfg
augustus-3.2.1/config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg moved 0.0%
config/species/bombus_terrestris2/bombus_terrestris2_parameters.cfg
augustus-3.2.1/config/species/botrytis_cinerea/botrytis_cinerea_metapars.cfg moved 0.0%
config/species/botrytis_cinerea/botrytis_cinerea_metapars.cfg
augustus-3.2.1/config/species/botrytis_cinerea/botrytis_cinerea_parameters.cfg moved 0.0%
config/species/botrytis_cinerea/botrytis_cinerea_parameters.cfg
augustus-3.2.1/config/species/brugia/brugia_parameters.cfg moved 0.0%
config/species/brugia/brugia_parameters.cfg
augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_metapars.cfg moved 0.0%
config/species/c_elegans_trsk/c_elegans_trsk_metapars.cfg
augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_metapars.utr.cfg moved 0.0%
config/species/c_elegans_trsk/c_elegans_trsk_metapars.utr.cfg
augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_parameters.cfg moved 0.0%
config/species/c_elegans_trsk/c_elegans_trsk_parameters.cfg
augustus-3.2.1/config/species/cacao/cacao_metapars.cfg moved 0.0%
config/species/cacao/cacao_metapars.cfg
augustus-3.2.1/config/species/cacao/cacao_metapars.utr.cfg moved 0.0%
config/species/cacao/cacao_metapars.utr.cfg
augustus-3.2.1/config/species/cacao/cacao_parameters.cfg moved 0.0%
config/species/cacao/cacao_parameters.cfg
augustus-3.2.1/config/species/caenorhabditis/caenorhabditis_metapars.cfg moved 0.0%
config/species/caenorhabditis/caenorhabditis_metapars.cfg
augustus-3.2.1/config/species/caenorhabditis/caenorhabditis_parameters.cfg moved 0.0%
config/species/caenorhabditis/caenorhabditis_parameters.cfg
augustus-3.2.1/config/species/camponotus_floridanus/camponotus_floridanus_metapars.cfg moved 0.0%
config/species/camponotus_floridanus/camponotus_floridanus_metapars.cfg
augustus-3.2.1/config/species/camponotus_floridanus/camponotus_floridanus_metapars.utr.cfg moved 0.0%
config/species/camponotus_floridanus/camponotus_floridanus_metapars.utr.cfg
augustus-3.2.1/config/species/camponotus_floridanus/camponotus_floridanus_parameters.cfg moved 0.0%
config/species/camponotus_floridanus/camponotus_floridanus_parameters.cfg
augustus-3.2.1/config/species/candida_albicans/candida_albicans_metapars.cfg moved 0.0%
config/species/candida_albicans/candida_albicans_metapars.cfg
augustus-3.2.1/config/species/candida_albicans/candida_albicans_parameters.cfg moved 0.0%
config/species/candida_albicans/candida_albicans_parameters.cfg
augustus-3.2.1/config/species/candida_guilliermondii/candida_guilliermondii_metapars.cfg moved 0.0%
config/species/candida_guilliermondii/candida_guilliermondii_metapars.cfg
augustus-3.2.1/config/species/candida_guilliermondii/candida_guilliermondii_parameters.cfg moved 0.0%
config/species/candida_guilliermondii/candida_guilliermondii_parameters.cfg
augustus-3.2.1/config/species/candida_tropicalis/candida_tropicalis_metapars.cfg moved 0.0%
config/species/candida_tropicalis/candida_tropicalis_metapars.cfg
augustus-3.2.1/config/species/candida_tropicalis/candida_tropicalis_parameters.cfg moved 0.0%
config/species/candida_tropicalis/candida_tropicalis_parameters.cfg
augustus-3.2.1/config/species/chaetomium_globosum/chaetomium_globosum_metapars.cfg moved 0.0%
config/species/chaetomium_globosum/chaetomium_globosum_metapars.cfg
augustus-3.2.1/config/species/chaetomium_globosum/chaetomium_globosum_parameters.cfg moved 0.0%
config/species/chaetomium_globosum/chaetomium_globosum_parameters.cfg
augustus-3.2.1/config/species/chicken/chicken_metapars.cfg moved 0.0%
config/species/chicken/chicken_metapars.cfg
augustus-3.2.1/config/species/chicken/chicken_metapars.utr.cfg moved 0.0%
config/species/chicken/chicken_metapars.utr.cfg
augustus-3.2.1/config/species/chicken/chicken_parameters.cfg moved 0.0%
config/species/chicken/chicken_parameters.cfg
augustus-3.2.1/config/species/chlamy2011/chlamy2011_metapars.cfg moved 0.0%
config/species/chlamy2011/chlamy2011_metapars.cfg
augustus-3.2.1/config/species/chlamy2011/chlamy2011_metapars.utr.cfg moved 0.0%
config/species/chlamy2011/chlamy2011_metapars.utr.cfg
augustus-3.2.1/config/species/chlamy2011/chlamy2011_parameters.cfg moved 0.0%
config/species/chlamy2011/chlamy2011_parameters.cfg
augustus-3.2.1/config/species/chlamydomonas/chlamydomonas_metapars.cfg moved 0.0%
config/species/chlamydomonas/chlamydomonas_metapars.cfg
augustus-3.2.1/config/species/chlamydomonas/chlamydomonas_parameters.cfg moved 0.0%
config/species/chlamydomonas/chlamydomonas_parameters.cfg
augustus-3.2.1/config/species/chlorella/chlorella_metapars.cfg moved 0.0%
config/species/chlorella/chlorella_metapars.cfg
augustus-3.2.1/config/species/chlorella/chlorella_metapars.utr.cfg moved 0.0%
config/species/chlorella/chlorella_metapars.utr.cfg
augustus-3.2.1/config/species/chlorella/chlorella_parameters.cfg moved 0.0%
config/species/chlorella/chlorella_parameters.cfg
augustus-3.2.1/config/species/coccidioides_immitis/coccidioides_immitis_metapars.cfg moved 0.0%
config/species/coccidioides_immitis/coccidioides_immitis_metapars.cfg
augustus-3.2.1/config/species/coccidioides_immitis/coccidioides_immitis_parameters.cfg moved 0.0%
config/species/coccidioides_immitis/coccidioides_immitis_parameters.cfg
augustus-3.2.1/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.cfg moved 0.0%
config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.cfg
augustus-3.2.1/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.utr.cfg moved 0.0%
config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_metapars.utr.cfg
augustus-3.2.1/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_parameters.cfg moved 0.0%
config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_parameters.cfg
augustus-3.2.1/config/species/coprinus/coprinus_parameters.cfg moved 0.0%
config/species/coprinus/coprinus_parameters.cfg
augustus-3.2.1/config/species/coprinus_cinereus/coprinus_cinereus_metapars.cfg moved 0.0%
config/species/coprinus_cinereus/coprinus_cinereus_metapars.cfg
augustus-3.2.1/config/species/coprinus_cinereus/coprinus_cinereus_parameters.cfg moved 0.0%
config/species/coprinus_cinereus/coprinus_cinereus_parameters.cfg
augustus-3.2.1/config/species/coyote_tobacco/coyote_tobacco_metapars.cfg removed
augustus-3.2.1/config/species/coyote_tobacco/coyote_tobacco_metapars.utr.cfg removed
augustus-3.2.1/config/species/coyote_tobacco/coyote_tobacco_parameters.cfg removed
augustus-3.2.1/config/species/cryptococcus/cryptococcus_parameters.cfg moved 0.0%
config/species/cryptococcus/cryptococcus_parameters.cfg
augustus-3.2.1/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_metapar
s.cfg
moved 0.0%
config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_metapars.cfg
augustus-3.2.1/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_paramet
ers.cfg
moved 0.0%
config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_parameters.cfg
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoforma
ns_B_metapars.cfg
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_metapars.cfg
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoforma
ns_B_parameters.cfg
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_parameters.cfg
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neof
ormans_JEC21_metapars.cfg
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_metapars.cfg
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neof
ormans_JEC21_parameters.cfg
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_parameters.cfg
augustus-3.2.1/config/species/culex/culex_metapars.cfg moved 0.0%
config/species/culex/culex_metapars.cfg
augustus-3.2.1/config/species/culex/culex_parameters.cfg moved 0.0%
config/species/culex/culex_parameters.cfg
augustus-3.2.1/config/species/culex/culex_parameters.old.cfg moved 0.0%
config/species/culex/culex_parameters.old.cfg
augustus-3.2.1/config/species/debaryomyces_hansenii/debaryomyces_hansenii_metapars.cfg moved 0.0%
config/species/debaryomyces_hansenii/debaryomyces_hansenii_metapars.cfg
augustus-3.2.1/config/species/debaryomyces_hansenii/debaryomyces_hansenii_parameters.cfg moved 0.0%
config/species/debaryomyces_hansenii/debaryomyces_hansenii_parameters.cfg
augustus-3.2.1/config/species/E_coli_K12/E_coli_K12_metapars.cfg moved 0.0%
config/species/E_coli_K12/E_coli_K12_metapars.cfg
augustus-3.2.1/config/species/E_coli_K12/E_coli_K12_metapars.utr.cfg moved 0.0%
config/species/E_coli_K12/E_coli_K12_metapars.utr.cfg
augustus-3.2.1/config/species/E_coli_K12/E_coli_K12_parameters.cfg moved 0.0%
config/species/E_coli_K12/E_coli_K12_parameters.cfg
augustus-3.2.1/config/species/elegans/elegans_parameters.cfg removed
augustus-3.2.1/config/species/elephant_shark/elephant_shark_metapars.cfg moved 0.0%
config/species/elephant_shark/elephant_shark_metapars.cfg
augustus-3.2.1/config/species/elephant_shark/elephant_shark_metapars.utr.cfg moved 0.0%
config/species/elephant_shark/elephant_shark_metapars.utr.cfg
augustus-3.2.1/config/species/elephant_shark/elephant_shark_parameters.cfg moved 0.0%
config/species/elephant_shark/elephant_shark_parameters.cfg
augustus-3.2.1/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_metapars.cfg moved 0.0%
config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_metapars.cfg
augustus-3.2.1/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_parameters.cf
g
moved 0.0%
config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_parameters.cfg
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auxprogs/checkTargetSortedness/checkTargetSortedness added
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auxprogs/filterBam/src/filterBam added
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bin/bam2hints added
bin/filterBam added
bin/homGeneMapping added
bin/joingenes added

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auxprogs/bam2hints added
auxprogs/bam2wig added
auxprogs/compileSpliceCands added
auxprogs/filterBam added
auxprogs/homGeneMapping added
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config/cgp added
config/profile added
config/species/volvox added
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Archives (all 26):

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augustus-3.2.1/auxprogs/auxBamFilters/eg1.s.bam moved 0.0%
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augustus-3.2.1/src/LICENCE.TXT moved 0.0%
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augustus-3.2.1/auxprogs/filterBam/data/example_data.about.txt moved 0.0%
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augustus-3.2.1/auxprogs/homGeneMapping/examples/gtfs/chicken.gtf moved 0.0%
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augustus-3.2.1/config/species/botrytis_cinerea/botrytis_cinerea_intron_probs.pbl moved 0.0%
config/species/botrytis_cinerea/botrytis_cinerea_intron_probs.pbl
augustus-3.2.1/config/species/botrytis_cinerea/botrytis_cinerea_weightmatrix.txt moved 0.0%
config/species/botrytis_cinerea/botrytis_cinerea_weightmatrix.txt
augustus-3.2.1/config/species/brugia/brugia_exon_probs.pbl moved 0.0%
config/species/brugia/brugia_exon_probs.pbl
augustus-3.2.1/config/species/brugia/brugia_intron_probs.pbl moved 0.0%
config/species/brugia/brugia_intron_probs.pbl
augustus-3.2.1/config/species/brugia/brugia_splicefile moved 0.0%
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augustus-3.2.1/config/species/brugia/brugia_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl moved 0.0%
config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl
augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl.withoutCRF moved 0.0%
config/species/c_elegans_trsk/c_elegans_trsk_exon_probs.pbl.withoutCRF
augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl moved 0.0%
config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl
augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl.withoutCRF moved 0.0%
config/species/c_elegans_trsk/c_elegans_trsk_intron_probs.pbl.withoutCRF
augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_utr_probs.pbl moved 0.0%
config/species/c_elegans_trsk/c_elegans_trsk_utr_probs.pbl
augustus-3.2.1/config/species/c_elegans_trsk/c_elegans_trsk_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/cacao/cacao_exon_probs.pbl moved 0.0%
config/species/cacao/cacao_exon_probs.pbl
augustus-3.2.1/config/species/cacao/cacao_intron_probs.pbl moved 0.0%
config/species/cacao/cacao_intron_probs.pbl
augustus-3.2.1/config/species/cacao/cacao_utr_probs.pbl moved 0.0%
config/species/cacao/cacao_utr_probs.pbl
augustus-3.2.1/config/species/cacao/cacao_weightmatrix.txt moved 0.0%
config/species/cacao/cacao_weightmatrix.txt
augustus-3.2.1/config/species/caenorhabditis/caenorhabditis_exon_probs.pbl moved 0.0%
config/species/caenorhabditis/caenorhabditis_exon_probs.pbl
augustus-3.2.1/config/species/caenorhabditis/caenorhabditis_intron_probs.pbl moved 0.0%
config/species/caenorhabditis/caenorhabditis_intron_probs.pbl
augustus-3.2.1/config/species/caenorhabditis/caenorhabditis_trans_shadow_partial_utr.pbl moved 0.0%
config/species/caenorhabditis/caenorhabditis_trans_shadow_partial_utr.pbl
augustus-3.2.1/config/species/caenorhabditis/caenorhabditis_utr_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/caenorhabditis/caenorhabditis_weightmatrix.txt moved 0.0%
config/species/caenorhabditis/caenorhabditis_weightmatrix.txt
augustus-3.2.1/config/species/camponotus_floridanus/camponotus_floridanus_exon_probs.pbl moved 0.0%
config/species/camponotus_floridanus/camponotus_floridanus_exon_probs.pbl
augustus-3.2.1/config/species/camponotus_floridanus/camponotus_floridanus_intron_probs.pbl moved 0.0%
config/species/camponotus_floridanus/camponotus_floridanus_intron_probs.pbl
augustus-3.2.1/config/species/camponotus_floridanus/camponotus_floridanus_weightmatrix.txt moved 0.0%
config/species/camponotus_floridanus/camponotus_floridanus_weightmatrix.txt
augustus-3.2.1/config/species/candida_albicans/candida_albicans_exon_probs.pbl moved 0.0%
config/species/candida_albicans/candida_albicans_exon_probs.pbl
augustus-3.2.1/config/species/candida_albicans/candida_albicans_intron_probs.pbl moved 0.0%
config/species/candida_albicans/candida_albicans_intron_probs.pbl
augustus-3.2.1/config/species/candida_albicans/candida_albicans_weightmatrix.txt moved 0.0%
config/species/candida_albicans/candida_albicans_weightmatrix.txt
augustus-3.2.1/config/species/candida_guilliermondii/candida_guilliermondii_exon_probs.pbl moved 0.0%
config/species/candida_guilliermondii/candida_guilliermondii_exon_probs.pbl
augustus-3.2.1/config/species/candida_guilliermondii/candida_guilliermondii_intron_probs.pbl moved 0.0%
config/species/candida_guilliermondii/candida_guilliermondii_intron_probs.pbl
augustus-3.2.1/config/species/candida_guilliermondii/candida_guilliermondii_weightmatrix.txt moved 0.0%
config/species/candida_guilliermondii/candida_guilliermondii_weightmatrix.txt
augustus-3.2.1/config/species/candida_tropicalis/candida_tropicalis_exon_probs.pbl moved 0.0%
config/species/candida_tropicalis/candida_tropicalis_exon_probs.pbl
augustus-3.2.1/config/species/candida_tropicalis/candida_tropicalis_intron_probs.pbl moved 0.0%
config/species/candida_tropicalis/candida_tropicalis_intron_probs.pbl
augustus-3.2.1/config/species/candida_tropicalis/candida_tropicalis_weightmatrix.txt moved 0.0%
config/species/candida_tropicalis/candida_tropicalis_weightmatrix.txt
augustus-3.2.1/config/species/chaetomium_globosum/chaetomium_globosum_exon_probs.pbl moved 0.0%
config/species/chaetomium_globosum/chaetomium_globosum_exon_probs.pbl
augustus-3.2.1/config/species/chaetomium_globosum/chaetomium_globosum_intron_probs.pbl moved 0.0%
config/species/chaetomium_globosum/chaetomium_globosum_intron_probs.pbl
augustus-3.2.1/config/species/chaetomium_globosum/chaetomium_globosum_weightmatrix.txt moved 0.0%
config/species/chaetomium_globosum/chaetomium_globosum_weightmatrix.txt
augustus-3.2.1/config/species/chicken/chicken_exon_probs.pbl moved 0.0%
config/species/chicken/chicken_exon_probs.pbl
augustus-3.2.1/config/species/chicken/chicken_intron_probs.pbl moved 0.0%
config/species/chicken/chicken_intron_probs.pbl
augustus-3.2.1/config/species/chicken/chicken_weightmatrix.txt moved 0.0%
config/species/chicken/chicken_weightmatrix.txt
augustus-3.2.1/config/species/chlamy2011/chlamy2011_exon_probs.pbl moved 0.0%
config/species/chlamy2011/chlamy2011_exon_probs.pbl
augustus-3.2.1/config/species/chlamy2011/chlamy2011_intron_probs.pbl moved 0.0%
config/species/chlamy2011/chlamy2011_intron_probs.pbl
augustus-3.2.1/config/species/chlamy2011/chlamy2011_trans_shadow_partial.pbl moved 0.0%
config/species/chlamy2011/chlamy2011_trans_shadow_partial.pbl
augustus-3.2.1/config/species/chlamy2011/chlamy2011_trans_shadow_partial_utr.pbl moved 0.0%
config/species/chlamy2011/chlamy2011_trans_shadow_partial_utr.pbl
augustus-3.2.1/config/species/chlamy2011/chlamy2011_utr_probs.pbl moved 0.0%
config/species/chlamy2011/chlamy2011_utr_probs.pbl
augustus-3.2.1/config/species/chlamy2011/chlamy2011_weightmatrix.txt moved 0.0%
config/species/chlamy2011/chlamy2011_weightmatrix.txt
augustus-3.2.1/config/species/chlamydomonas/chlamydomonas_exon_probs.pbl moved 0.0%
config/species/chlamydomonas/chlamydomonas_exon_probs.pbl
augustus-3.2.1/config/species/chlamydomonas/chlamydomonas_intron_probs.pbl moved 0.0%
config/species/chlamydomonas/chlamydomonas_intron_probs.pbl
augustus-3.2.1/config/species/chlamydomonas/chlamydomonas_trans_shadow_partial.pbl moved 0.0%
config/species/chlamydomonas/chlamydomonas_trans_shadow_partial.pbl
augustus-3.2.1/config/species/chlamydomonas/chlamydomonas_trans_shadow_partial_utr.pbl moved 0.0%
config/species/chlamydomonas/chlamydomonas_trans_shadow_partial_utr.pbl
augustus-3.2.1/config/species/chlamydomonas/chlamydomonas_utr_probs.pbl moved 0.0%
config/species/chlamydomonas/chlamydomonas_utr_probs.pbl
augustus-3.2.1/config/species/chlamydomonas/chlamydomonas_weightmatrix.txt moved 0.0%
config/species/chlamydomonas/chlamydomonas_weightmatrix.txt
augustus-3.2.1/config/species/chlorella/chlorella_exon_probs.pbl moved 0.0%
config/species/chlorella/chlorella_exon_probs.pbl
augustus-3.2.1/config/species/chlorella/chlorella_intron_probs.pbl moved 0.0%
config/species/chlorella/chlorella_intron_probs.pbl
augustus-3.2.1/config/species/chlorella/chlorella_utr_probs.pbl moved 0.0%
config/species/chlorella/chlorella_utr_probs.pbl
augustus-3.2.1/config/species/chlorella/chlorella_weightmatrix.txt moved 0.0%
config/species/chlorella/chlorella_weightmatrix.txt
augustus-3.2.1/config/species/coccidioides_immitis/coccidioides_immitis_exon_probs.pbl moved 0.0%
config/species/coccidioides_immitis/coccidioides_immitis_exon_probs.pbl
augustus-3.2.1/config/species/coccidioides_immitis/coccidioides_immitis_intron_probs.pbl moved 0.0%
config/species/coccidioides_immitis/coccidioides_immitis_intron_probs.pbl
augustus-3.2.1/config/species/coccidioides_immitis/coccidioides_immitis_weightmatrix.txt moved 0.0%
config/species/coccidioides_immitis/coccidioides_immitis_weightmatrix.txt
augustus-3.2.1/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_exon_probs.pbl moved 0.0%
config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_exon_probs.pbl
augustus-3.2.1/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_intron_probs.pbl moved 0.0%
config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_intron_probs.pbl
augustus-3.2.1/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_utr_probs.pbl moved 0.0%
config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_utr_probs.pbl
augustus-3.2.1/config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_weightmatrix.txt moved 0.0%
config/species/Conidiobolus_coronatus/Conidiobolus_coronatus_weightmatrix.txt
augustus-3.2.1/config/species/coprinus/coprinus_exon_probs.pbl moved 0.0%
config/species/coprinus/coprinus_exon_probs.pbl
augustus-3.2.1/config/species/coprinus/coprinus_intron_probs.pbl moved 0.0%
config/species/coprinus/coprinus_intron_probs.pbl
augustus-3.2.1/config/species/coprinus/coprinus_weightmatrix.txt moved 0.0%
config/species/coprinus/coprinus_weightmatrix.txt
augustus-3.2.1/config/species/coprinus_cinereus/coprinus_cinereus_exon_probs.pbl moved 0.0%
config/species/coprinus_cinereus/coprinus_cinereus_exon_probs.pbl
augustus-3.2.1/config/species/coprinus_cinereus/coprinus_cinereus_intron_probs.pbl moved 0.0%
config/species/coprinus_cinereus/coprinus_cinereus_intron_probs.pbl
augustus-3.2.1/config/species/coprinus_cinereus/coprinus_cinereus_weightmatrix.txt moved 0.0%
config/species/coprinus_cinereus/coprinus_cinereus_weightmatrix.txt
augustus-3.2.1/config/species/coyote_tobacco/coyote_tobacco_exon_probs.pbl removed
augustus-3.2.1/config/species/coyote_tobacco/coyote_tobacco_intron_probs.pbl removed
augustus-3.2.1/config/species/coyote_tobacco/coyote_tobacco_trans_shadow_partial_utr.pbl removed
augustus-3.2.1/config/species/coyote_tobacco/coyote_tobacco_utr_probs.pbl removed
augustus-3.2.1/config/species/coyote_tobacco/coyote_tobacco_weightmatrix.txt removed
augustus-3.2.1/config/species/cryptococcus/cryptococcus_exon_probs.pbl moved 0.0%
config/species/cryptococcus/cryptococcus_exon_probs.pbl
augustus-3.2.1/config/species/cryptococcus/cryptococcus_intron_probs.pbl moved 0.0%
config/species/cryptococcus/cryptococcus_intron_probs.pbl
augustus-3.2.1/config/species/cryptococcus/cryptococcus_weightmatrix.txt moved 0.0%
config/species/cryptococcus/cryptococcus_weightmatrix.txt
augustus-3.2.1/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_exon_pr
obs.pbl
moved 0.0%
config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_exon_probs.pbl
augustus-3.2.1/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_intron_
probs.pbl
moved 0.0%
config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_intron_probs.pbl
augustus-3.2.1/config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_weightm
atrix.txt
moved 0.0%
config/species/cryptococcus_neoformans_gattii/cryptococcus_neoformans_gattii_weightmatrix.txt
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoforma
ns_B_exon_probs.pbl
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_exon_probs.pbl
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoforma
ns_B_intron_probs.pbl
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_intron_probs.pbl
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoforma
ns_B_weightmatrix.txt
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_B/cryptococcus_neoformans_neoformans_B_weightmatrix.txt
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neof
ormans_JEC21_exon_probs.pbl
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_exon_probs.pbl
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neof
ormans_JEC21_intron_probs.pbl
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_intron_probs.pbl
augustus-3.2.1/config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neof
ormans_JEC21_weightmatrix.txt
moved 0.0%
config/species/cryptococcus_neoformans_neoformans_JEC21/cryptococcus_neoformans_neoformans_JEC21_weightmatrix.txt
augustus-3.2.1/config/species/culex/culex_exon_probs.pbl moved 0.0%
config/species/culex/culex_exon_probs.pbl
augustus-3.2.1/config/species/culex/culex_exon_probs.pbl.wech moved 0.0%
config/species/culex/culex_exon_probs.pbl.wech
augustus-3.2.1/config/species/culex/culex_intron_probs.pbl.wech moved 0.0%
config/species/culex/culex_intron_probs.pbl.wech
augustus-3.2.1/config/species/culex/culex_trans_shadow_partial_utr.pbl moved 0.0%
config/species/culex/culex_trans_shadow_partial_utr.pbl
augustus-3.2.1/config/species/culex/culex_utr_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/culex/culex_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/debaryomyces_hansenii/debaryomyces_hansenii_exon_probs.pbl moved 0.0%
config/species/debaryomyces_hansenii/debaryomyces_hansenii_exon_probs.pbl
augustus-3.2.1/config/species/debaryomyces_hansenii/debaryomyces_hansenii_intron_probs.pbl moved 0.0%
config/species/debaryomyces_hansenii/debaryomyces_hansenii_intron_probs.pbl
augustus-3.2.1/config/species/debaryomyces_hansenii/debaryomyces_hansenii_weightmatrix.txt moved 0.0%
config/species/debaryomyces_hansenii/debaryomyces_hansenii_weightmatrix.txt
augustus-3.2.1/config/species/E_coli_K12/E_coli_K12_exon_probs.pbl moved 0.0%
config/species/E_coli_K12/E_coli_K12_exon_probs.pbl
augustus-3.2.1/config/species/E_coli_K12/E_coli_K12_ovlp_len.pbl moved 0.0%
config/species/E_coli_K12/E_coli_K12_ovlp_len.pbl
augustus-3.2.1/config/species/E_coli_K12/E_coli_K12_trans_shadow_bacterium.pbl moved 0.0%
config/species/E_coli_K12/E_coli_K12_trans_shadow_bacterium.pbl
augustus-3.2.1/config/species/E_coli_K12/E_coli_K12_weightmatrix.txt moved 0.0%
config/species/E_coli_K12/E_coli_K12_weightmatrix.txt
augustus-3.2.1/config/species/elegans/elegans_exon_probs.pbl removed
augustus-3.2.1/config/species/elegans/elegans_intron_probs.pbl removed
augustus-3.2.1/config/species/elegans/elegans_weightmatrix.txt removed
augustus-3.2.1/config/species/elephant_shark/elephant_shark_exon_probs.pbl moved 0.0%
config/species/elephant_shark/elephant_shark_exon_probs.pbl
augustus-3.2.1/config/species/elephant_shark/elephant_shark_intron_probs.pbl moved 0.0%
config/species/elephant_shark/elephant_shark_intron_probs.pbl
augustus-3.2.1/config/species/elephant_shark/elephant_shark_weightmatrix.txt moved 0.0%
config/species/elephant_shark/elephant_shark_weightmatrix.txt
augustus-3.2.1/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_exon_probs.pb
l
moved 0.0%
config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_exon_probs.pbl
augustus-3.2.1/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_intron_probs.
pbl
moved 0.0%
config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_intron_probs.pbl
augustus-3.2.1/config/species/encephalitozoon_cuniculi_GB/encephalitozoon_cuniculi_GB_weightmatrix.
txt
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augustus-3.2.1/config/species/eremothecium_gossypii/eremothecium_gossypii_exon_probs.pbl moved 0.0%
config/species/eremothecium_gossypii/eremothecium_gossypii_exon_probs.pbl
augustus-3.2.1/config/species/eremothecium_gossypii/eremothecium_gossypii_intron_probs.pbl moved 0.0%
config/species/eremothecium_gossypii/eremothecium_gossypii_intron_probs.pbl
augustus-3.2.1/config/species/eremothecium_gossypii/eremothecium_gossypii_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/fly/fly_exon_probs.pbl moved 0.0%
config/species/fly/fly_exon_probs.pbl
augustus-3.2.1/config/species/fly/fly_intron_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/fly/fly_utr_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/fly/fly_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/fusarium/fusarium_exon_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/fusarium/fusarium_intron_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/fusarium/fusarium_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/fusarium_graminearum/fusarium_graminearum_exon_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/fusarium_graminearum/fusarium_graminearum_intron_probs.pbl moved 0.0%
config/species/fusarium_graminearum/fusarium_graminearum_intron_probs.pbl
augustus-3.2.1/config/species/fusarium_graminearum/fusarium_graminearum_weightmatrix.txt moved 0.0%
config/species/fusarium_graminearum/fusarium_graminearum_weightmatrix.txt
augustus-3.2.1/config/species/galdieria/galdieria_exon_probs.pbl moved 0.0%
config/species/galdieria/galdieria_exon_probs.pbl
augustus-3.2.1/config/species/galdieria/galdieria_intron_probs.pbl moved 0.0%
config/species/galdieria/galdieria_intron_probs.pbl
augustus-3.2.1/config/species/galdieria/galdieria_splicefile moved 0.0%
config/species/galdieria/galdieria_splicefile
augustus-3.2.1/config/species/galdieria/galdieria_trans_shadow_partial_utr.pbl moved 0.0%
config/species/galdieria/galdieria_trans_shadow_partial_utr.pbl
augustus-3.2.1/config/species/galdieria/galdieria_utr_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/galdieria/galdieria_weightmatrix.txt moved 0.0%
config/species/galdieria/galdieria_weightmatrix.txt
augustus-3.2.1/config/species/generic/generic_exon_probs.pbl removed
augustus-3.2.1/config/species/generic/generic_exon_probs.pbl.test removed
augustus-3.2.1/config/species/generic/generic_intron_probs.pbl removed
augustus-3.2.1/config/species/generic/generic_intron_probs.pbl.test removed
augustus-3.2.1/config/species/generic/generic_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/heliconius_melpomene1/heliconius_melpomene1_exon_probs.pbl moved 0.0%
config/species/heliconius_melpomene1/heliconius_melpomene1_exon_probs.pbl
augustus-3.2.1/config/species/heliconius_melpomene1/heliconius_melpomene1_intron_probs.pbl moved 0.0%
config/species/heliconius_melpomene1/heliconius_melpomene1_intron_probs.pbl
augustus-3.2.1/config/species/heliconius_melpomene1/heliconius_melpomene1_weightmatrix.txt moved 0.0%
config/species/heliconius_melpomene1/heliconius_melpomene1_weightmatrix.txt
augustus-3.2.1/config/species/histoplasma/histoplasma_exon_probs.pbl moved 0.0%
config/species/histoplasma/histoplasma_exon_probs.pbl
augustus-3.2.1/config/species/histoplasma/histoplasma_intron_probs.pbl moved 0.0%
config/species/histoplasma/histoplasma_intron_probs.pbl
augustus-3.2.1/config/species/histoplasma/histoplasma_weightmatrix.txt moved 0.0%
config/species/histoplasma/histoplasma_weightmatrix.txt
augustus-3.2.1/config/species/histoplasma_capsulatum/histoplasma_capsulatum_exon_probs.pbl moved 0.0%
config/species/histoplasma_capsulatum/histoplasma_capsulatum_exon_probs.pbl
augustus-3.2.1/config/species/histoplasma_capsulatum/histoplasma_capsulatum_intron_probs.pbl moved 0.0%
config/species/histoplasma_capsulatum/histoplasma_capsulatum_intron_probs.pbl
augustus-3.2.1/config/species/histoplasma_capsulatum/histoplasma_capsulatum_weightmatrix.txt moved 0.0%
config/species/histoplasma_capsulatum/histoplasma_capsulatum_weightmatrix.txt
augustus-3.2.1/config/species/honeybee1/honeybee1_exon_probs.pbl moved 0.0%
config/species/honeybee1/honeybee1_exon_probs.pbl
augustus-3.2.1/config/species/honeybee1/honeybee1_exon_probs.pbl.withoutCRF moved 0.0%
config/species/honeybee1/honeybee1_exon_probs.pbl.withoutCRF
augustus-3.2.1/config/species/honeybee1/honeybee1_intron_probs.pbl moved 0.0%
config/species/honeybee1/honeybee1_intron_probs.pbl
augustus-3.2.1/config/species/honeybee1/honeybee1_intron_probs.pbl.withoutCRF moved 0.0%
config/species/honeybee1/honeybee1_intron_probs.pbl.withoutCRF
augustus-3.2.1/config/species/honeybee1/honeybee1_parameters.cfg.orig1 moved 0.0%
config/species/honeybee1/honeybee1_parameters.cfg.orig1
augustus-3.2.1/config/species/honeybee1/honeybee1_utr_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/honeybee1/honeybee1_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/human/human_exon_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/human/human_intron_probs.pbl moved 0.0%
config/species/human/human_intron_probs.pbl
augustus-3.2.1/config/species/human/human_trans_shadow_partial_utr.pbl moved 0.0%
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augustus-3.2.1/config/species/human/human_utr_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/human/human_weightmatrix.txt moved 0.0%
config/species/human/human_weightmatrix.txt
augustus-3.2.1/config/species/kluyveromyces_lactis/kluyveromyces_lactis_exon_probs.pbl moved 0.0%
config/species/kluyveromyces_lactis/kluyveromyces_lactis_exon_probs.pbl
augustus-3.2.1/config/species/kluyveromyces_lactis/kluyveromyces_lactis_intron_probs.pbl moved 0.0%
config/species/kluyveromyces_lactis/kluyveromyces_lactis_intron_probs.pbl
augustus-3.2.1/config/species/kluyveromyces_lactis/kluyveromyces_lactis_weightmatrix.txt moved 0.0%
config/species/kluyveromyces_lactis/kluyveromyces_lactis_weightmatrix.txt
augustus-3.2.1/config/species/laccaria_bicolor/laccaria_bicolor_exon_probs.pbl moved 0.0%
config/species/laccaria_bicolor/laccaria_bicolor_exon_probs.pbl
augustus-3.2.1/config/species/laccaria_bicolor/laccaria_bicolor_intron_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/laccaria_bicolor/laccaria_bicolor_weightmatrix.txt moved 0.0%
config/species/laccaria_bicolor/laccaria_bicolor_weightmatrix.txt
augustus-3.2.1/config/species/lamprey/lamprey_exon_probs.pbl moved 0.0%
config/species/lamprey/lamprey_exon_probs.pbl
augustus-3.2.1/config/species/lamprey/lamprey_intron_probs.pbl moved 0.0%
config/species/lamprey/lamprey_intron_probs.pbl
augustus-3.2.1/config/species/lamprey/lamprey_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/leishmania_tarentolae/leishmania_tarentolae_exon_probs.pbl moved 0.0%
config/species/leishmania_tarentolae/leishmania_tarentolae_exon_probs.pbl
augustus-3.2.1/config/species/leishmania_tarentolae/leishmania_tarentolae_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_exon_probs.pbl moved 0.0%
config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_exon_probs.pbl
augustus-3.2.1/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_intron_probs.pbl moved 0.0%
config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_intron_probs.pbl
augustus-3.2.1/config/species/lodderomyces_elongisporus/lodderomyces_elongisporus_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/magnaporthe_grisea/magnaporthe_grisea_exon_probs.pbl moved 0.0%
config/species/magnaporthe_grisea/magnaporthe_grisea_exon_probs.pbl
augustus-3.2.1/config/species/magnaporthe_grisea/magnaporthe_grisea_intron_probs.pbl moved 0.0%
config/species/magnaporthe_grisea/magnaporthe_grisea_intron_probs.pbl
augustus-3.2.1/config/species/magnaporthe_grisea/magnaporthe_grisea_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/maize/maize_exon_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/maize/maize_intron_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/maize/maize_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/maize5/maize5_exon_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/maize5/maize5_intron_probs.pbl moved 0.0%
config/species/maize5/maize5_intron_probs.pbl
augustus-3.2.1/config/species/maize5/maize5_utr_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/maker2_athal1/maker2_athal1_exon_probs.pbl removed
augustus-3.2.1/config/species/maker2_athal1/maker2_athal1_intron_probs.pbl removed
augustus-3.2.1/config/species/maker2_athal1/maker2_athal1_parameters.cfg.orig1 removed
augustus-3.2.1/config/species/maker2_athal1/maker2_athal1_weightmatrix.txt removed
augustus-3.2.1/config/species/maker2_c_elegans1/maker2_c_elegans1_exon_probs.pbl removed
augustus-3.2.1/config/species/maker2_c_elegans1/maker2_c_elegans1_intron_probs.pbl removed
augustus-3.2.1/config/species/maker2_c_elegans1/maker2_c_elegans1_parameters.cfg.orig1 removed
augustus-3.2.1/config/species/maker2_c_elegans1/maker2_c_elegans1_weightmatrix.txt removed
augustus-3.2.1/config/species/maker2_dmel1/maker2_dmel1_exon_probs.pbl removed
augustus-3.2.1/config/species/maker2_dmel1/maker2_dmel1_intron_probs.pbl removed
augustus-3.2.1/config/species/maker2_dmel1/maker2_dmel1_parameters.cfg.orig1 removed
augustus-3.2.1/config/species/maker2_dmel1/maker2_dmel1_parameters.cfg.orig2 removed
augustus-3.2.1/config/species/maker2_dmel1/maker2_dmel1_weightmatrix.txt removed
augustus-3.2.1/config/species/maker2_spomb1/maker2_spomb1_exon_probs.pbl removed
augustus-3.2.1/config/species/maker2_spomb1/maker2_spomb1_intron_probs.pbl removed
augustus-3.2.1/config/species/maker2_spomb1/maker2_spomb1_parameters.cfg.orig1 removed
augustus-3.2.1/config/species/maker2_spomb1/maker2_spomb1_parameters.cfg.orig2 removed
augustus-3.2.1/config/species/maker2_spomb1/maker2_spomb1_weightmatrix.txt removed
augustus-3.2.1/config/species/nasonia/nasonia_exon_probs.pbl moved 0.0%
config/species/nasonia/nasonia_exon_probs.pbl
augustus-3.2.1/config/species/nasonia/nasonia_weightmatrix.txt moved 0.0%
config/species/nasonia/nasonia_weightmatrix.txt
augustus-3.2.1/config/species/neurospora/neurospora_exon_probs.pbl moved 0.0%
config/species/neurospora/neurospora_exon_probs.pbl
augustus-3.2.1/config/species/neurospora/neurospora_intron_probs.pbl moved 0.0%
config/species/neurospora/neurospora_intron_probs.pbl
augustus-3.2.1/config/species/neurospora/neurospora_weightmatrix.txt moved 0.0%
config/species/neurospora/neurospora_weightmatrix.txt
augustus-3.2.1/config/species/neurospora_crassa/neurospora_crassa_exon_probs.pbl moved 0.0%
config/species/neurospora_crassa/neurospora_crassa_exon_probs.pbl
augustus-3.2.1/config/species/neurospora_crassa/neurospora_crassa_intron_probs.pbl moved 0.0%
config/species/neurospora_crassa/neurospora_crassa_intron_probs.pbl
augustus-3.2.1/config/species/neurospora_crassa/neurospora_crassa_weightmatrix.txt moved 0.0%
config/species/neurospora_crassa/neurospora_crassa_weightmatrix.txt
augustus-3.2.1/config/species/parasteatoda/parasteatoda_exon_probs.pbl moved 0.0%
config/species/parasteatoda/parasteatoda_exon_probs.pbl
augustus-3.2.1/config/species/parasteatoda/parasteatoda_intron_probs.pbl moved 0.0%
config/species/parasteatoda/parasteatoda_intron_probs.pbl
augustus-3.2.1/config/species/parasteatoda/parasteatoda_utr_probs.pbl moved 0.0%
config/species/parasteatoda/parasteatoda_utr_probs.pbl
augustus-3.2.1/config/species/parasteatoda/parasteatoda_weightmatrix.txt moved 0.0%
config/species/parasteatoda/parasteatoda_weightmatrix.txt
augustus-3.2.1/config/species/pchrysosporium/pchrysosporium_exon_probs.pbl moved 0.0%
config/species/pchrysosporium/pchrysosporium_exon_probs.pbl
augustus-3.2.1/config/species/pchrysosporium/pchrysosporium_intron_probs.pbl moved 0.0%
config/species/pchrysosporium/pchrysosporium_intron_probs.pbl
augustus-3.2.1/config/species/pchrysosporium/pchrysosporium_weightmatrix.txt moved 0.0%
config/species/pchrysosporium/pchrysosporium_weightmatrix.txt
augustus-3.2.1/config/species/pea_aphid/pea_aphid_exon_probs.pbl moved 0.0%
config/species/pea_aphid/pea_aphid_exon_probs.pbl
augustus-3.2.1/config/species/pea_aphid/pea_aphid_intron_probs.pbl moved 0.0%
config/species/pea_aphid/pea_aphid_intron_probs.pbl
augustus-3.2.1/config/species/pea_aphid/pea_aphid_trans_shadow_partial_utr.pbl moved 0.0%
config/species/pea_aphid/pea_aphid_trans_shadow_partial_utr.pbl
augustus-3.2.1/config/species/pea_aphid/pea_aphid_utr_probs.pbl moved 0.0%
config/species/pea_aphid/pea_aphid_utr_probs.pbl
augustus-3.2.1/config/species/pea_aphid/pea_aphid_weightmatrix.txt moved 0.0%
config/species/pea_aphid/pea_aphid_weightmatrix.txt
augustus-3.2.1/config/species/pfalciparum/pfalciparum_exon_probs.pbl moved 0.0%
config/species/pfalciparum/pfalciparum_exon_probs.pbl
augustus-3.2.1/config/species/pfalciparum/pfalciparum_intron_probs.pbl moved 0.0%
config/species/pfalciparum/pfalciparum_intron_probs.pbl
augustus-3.2.1/config/species/pfalciparum/pfalciparum_trans_shadow_partial.pbl moved 0.0%
config/species/pfalciparum/pfalciparum_trans_shadow_partial.pbl
augustus-3.2.1/config/species/pfalciparum/pfalciparum_weightmatrix.txt moved 0.0%
config/species/pfalciparum/pfalciparum_weightmatrix.txt
augustus-3.2.1/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_exon_probs.pb
l
moved 0.0%
config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_exon_probs.pbl
augustus-3.2.1/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_intron_probs.
pbl
moved 0.0%
config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_intron_probs.pbl
augustus-3.2.1/config/species/phanerochaete_chrysosporium/phanerochaete_chrysosporium_weightmatrix.
txt
moved 0.0%
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augustus-3.2.1/config/species/pichia_stipitis/pichia_stipitis_exon_probs.pbl moved 0.0%
config/species/pichia_stipitis/pichia_stipitis_exon_probs.pbl
augustus-3.2.1/config/species/pichia_stipitis/pichia_stipitis_intron_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/pichia_stipitis/pichia_stipitis_weightmatrix.txt moved 0.0%
config/species/pichia_stipitis/pichia_stipitis_weightmatrix.txt
augustus-3.2.1/config/species/pneumocystis/pneumocystis_exon_probs.pbl moved 0.0%
config/species/pneumocystis/pneumocystis_exon_probs.pbl
augustus-3.2.1/config/species/pneumocystis/pneumocystis_intron_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/pneumocystis/pneumocystis_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/rhizopus_oryzae/rhizopus_oryzae_exon_probs.pbl moved 0.0%
config/species/rhizopus_oryzae/rhizopus_oryzae_exon_probs.pbl
augustus-3.2.1/config/species/rhizopus_oryzae/rhizopus_oryzae_intron_probs.pbl moved 0.0%
config/species/rhizopus_oryzae/rhizopus_oryzae_intron_probs.pbl
augustus-3.2.1/config/species/rhizopus_oryzae/rhizopus_oryzae_weightmatrix.txt moved 0.0%
config/species/rhizopus_oryzae/rhizopus_oryzae_weightmatrix.txt
augustus-3.2.1/config/species/rhodnius/rhodnius_exon_probs.pbl moved 0.0%
config/species/rhodnius/rhodnius_exon_probs.pbl
augustus-3.2.1/config/species/rhodnius/rhodnius_intron_probs.pbl moved 0.0%
config/species/rhodnius/rhodnius_intron_probs.pbl
augustus-3.2.1/config/species/rhodnius/rhodnius_utr_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/rhodnius/rhodnius_weightmatrix.txt moved 0.0%
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augustus-3.2.1/config/species/rice/rice_exon_probs.pbl moved 0.0%
config/species/rice/rice_exon_probs.pbl
augustus-3.2.1/config/species/rice/rice_intron_probs.pbl moved 0.0%
config/species/rice/rice_intron_probs.pbl
augustus-3.2.1/config/species/rice/rice_utr_probs.pbl moved 0.0%
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augustus-3.2.1/config/species/rice/rice_weightmatrix.txt moved 0.0%
config/species/rice/rice_weightmatrix.txt
augustus-3.2.1/config/species/s_aureus/s_aureus_exon_probs.pbl moved 0.0%
config/species/s_aureus/s_aureus_exon_probs.pbl
augustus-3.2.1/config/species/s_aureus/s_aureus_ovlp_len.pbl moved 0.0%
config/species/s_aureus/s_aureus_ovlp_len.pbl
augustus-3.2.1/config/species/s_aureus/s_aureus_trans_shadow_bacterium.pbl moved 0.0%
config/species/s_aureus/s_aureus_trans_shadow_bacterium.pbl
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augustus-3.2.1/config/species/s_pneumoniae/s_pneumoniae_exon_probs.pbl moved 0.0%
config/species/s_pneumoniae/s_pneumoniae_exon_probs.pbl
augustus-3.2.1/config/species/s_pneumoniae/s_pneumoniae_ovlp_len.pbl moved 0.0%
config/species/s_pneumoniae/s_pneumoniae_ovlp_len.pbl
augustus-3.2.1/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig1 moved 0.0%
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augustus-3.2.1/config/species/s_pneumoniae/s_pneumoniae_parameters.cfg.orig3 moved 0.0%
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augustus-3.2.1/config/species/s_pneumoniae/s_pneumoniae_trans_shadow_bacterium.pbl moved 0.0%
config/species/s_pneumoniae/s_pneumoniae_trans_shadow_bacterium.pbl
augustus-3.2.1/config/species/s_pneumoniae/s_pneumoniae_weightmatrix.txt moved 0.0%
config/species/s_pneumoniae/s_pneumoniae_weightmatrix.txt
augustus-3.2.1/config/species/saccharomyces/saccharomyces_exon_probs.pbl moved 0.0%
config/species/saccharomyces/saccharomyces_exon_probs.pbl
augustus-3.2.1/config/species/saccharomyces/saccharomyces_intron_probs.pbl moved 0.0%
config/species/saccharomyces/saccharomyces_intron_probs.pbl
augustus-3.2.1/config/species/saccharomyces/saccharomyces_weightmatrix.txt moved 0.0%
config/species/saccharomyces/saccharomyces_weightmatrix.txt
augustus-3.2.1/config/species/saccharomyces_cerevisiae_rm11-1a_1/saccharomyces_cerevisiae_rm11-1a_1
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augustus-3.2.1/docs/tutorial/results/est.f.psl moved 0.0%
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augustus-3.2.1/docs/tutorial/results/genes.gb moved 0.0%
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auxprogs/compileSpliceCands/chr21.fa added
auxprogs/compileSpliceCands/out.gff added
config/species/volvox/volvox_exon_probs.pbl added
config/species/volvox/volvox_intron_probs.pbl added
config/species/volvox/volvox_utr_probs.pbl added
config/species/volvox/volvox_weightmatrix.txt added
src/cflags added
src/cxxflags added

Packages Compared:

augustus-3.2.1.tar.gz
augustus-3.2.2.tar.gz


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